我按照http://cran.r-project.org/bin/linux/ubuntu/的指示通过CRAN仓库安装了R.我以前能够在其他几个相同的Ubuntu 10.04系统上安装插入符,但今天install.packages('caret', dependencies=c('Depends','Suggests'))
导致了以下错误(只是一个示例)。任何提示?
... ** testing if installed package can be loaded * DONE (dynlm) ERROR: dependencies ‘reshape’, ‘plyr’, ‘digest’ are not available for package ‘ggplot2’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/ggplot2’ ERROR: dependencies ‘digest’, ‘stringr’, ‘mutatr’, ‘evaluate’ are not available for package ‘testthat’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/testthat’ * installing *source* package ‘ROCR’ ... ** R ... ** testing if installed package can be loaded * DONE (ROCR) ERROR: dependencies ‘plyr’, ‘stringr’ are not available for package ‘reshape2’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/reshape2’ * installing *source* package ‘party’ ... ** libs ... ** testing if installed package can be loaded * DONE (party) ERROR: dependencies ‘reshape’, ‘plyr’ are not available for package ‘caret’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/caret’ * installing *source* package ‘rocc’ ... ** R ... * DONE (rocc) ERROR: dependency ‘reshape2’ is not available for package ‘Cubist’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/Cubist’ The downloaded packages are in ‘/tmp/Rtmp2TsElZ/downloaded_packages’ There were 20 warnings (use warnings() to see them) > warnings() Warning messages: 1: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'Rmpi' had non-zero exit status 2: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'rpvm' had non-zero exit status 3: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'rsprng' had non-zero exit status 4: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'XML' had non-zero exit status 5: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'RODBC' had non-zero exit status 6: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'rgl' had non-zero exit status 7: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'RWeka' had non-zero exit status 8: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'shapes' had non-zero exit status 9: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'rgeos' had non-zero exit status 10: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'rgdal' had non-zero exit status 11: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'plyr' had non-zero exit status 12: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'stringr' had non-zero exit status 13: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'latentnet' had non-zero exit status 14: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'reshape' had non-zero exit status 15: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'statnet' had non-zero exit status 16: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'ggplot2' had non-zero exit status 17: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'testthat' had non-zero exit status 18: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'reshape2' had non-zero exit status 19: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'caret' had non-zero exit status 20: In install.packages("caret", dependencies = c("Depends", ... : installation of package 'Cubist' had non-zero exit status > library(caret) Error in library(caret) : there is no package called 'caret' > sessionInfo() R version 2.13.0 (2011-04-13) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.13.0 > install.packages('caret', dependencies=c('Depends','Suggests')) # run again ... ERROR: dependencies ‘digest’, ‘stringr’, ‘mutatr’, ‘evaluate’ are not available for package ‘testthat’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/testthat’ ERROR: dependency ‘itertools’ is not available for package ‘plyr’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/plyr’ ERROR: dependencies ‘RWekajars’, ‘rJava’ are not available for package ‘RWeka’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/RWeka’ ERROR: dependencies ‘plyr’, ‘stringr’ are not available for package ‘reshape2’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/reshape2’ ERROR: dependency ‘plyr’ is not available for package ‘reshape’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/reshape’ ERROR: dependency ‘reshape2’ is not available for package ‘Cubist’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/Cubist’ ERROR: dependencies ‘reshape’, ‘plyr’ are not available for package ‘caret’ * removing ‘/home/yang/R/x86_64-pc-linux-gnu-library/2.13/caret’ ...
答案 0 :(得分:3)
您的Ubuntu盒子上是否有正确的开发包?我将开始处理失败的软件包列表,并尝试使用install.packages()
逐个安装它们。我知道其中一些失败的软件包需要大量的开发头文件来编译R包。
如果您一次执行这些操作,您将开始了解软件包失败的原因。我使用Fedora,但对于 rgdal ,例如,从我的发行版的软件包管理器安装了gdal-devel
和proj-devel
,proj-epsg
和proj-nad
,以便编译那个R包。对于 XML ,我需要安装libxml2-devel
等。如果您单步执行失败的R软件包,很明显哪些标头丢失了,您可以使用软件包管理器查找哪些软件包你需要安装Ubuntu软件包(debs)来获取这些标题。