R网状结构无法正确加载环境-错误或操作员错误?

时间:2018-08-06 20:56:59

标签: r anaconda conda reticulate

当我激活conda env并运行R时,我可以加载一个程序包。当我在基本环境中启动R并使用reticulate::use_condaenv加载我的conda env时,R无法加载该程序包。错误或操作员错误?

balter@balterbox:~$ R

R version 3.4.3 (2017-11-30) -- "Kite-Eating Tree"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-conda_cos6-linux-gnu (64-bit)

> library(reticulate)
> use_condaenv('microbiome')
> library(BiocStyle)
Error in library(BiocStyle) : there is no package called ‘BiocStyle’
>
Save workspace image? [y/n/c]: n
balter@balterbox:~$ conda activate microbiome
(microbiome) balter@balterbox:~$ R

R version 3.4.1 (2017-06-30) -- "Single Candle"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

> library(BiocStyle)
>
Save workspace image? [y/n/c]: n
(microbiome) balter@balterbox:~$ conda deactivate

Conda信息

balter@balterbox:~$ conda info

     active environment : None
            shell level : 0
       user config file : /home/balter/.condarc
 populated config files : /home/balter/.condarc
          conda version : 4.5.9
    conda-build version : not installed
         python version : 3.6.5.final.0
       base environment : /home/balter/conda  (writable)
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/free/linux-64
                          https://repo.anaconda.com/pkgs/free/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
                          https://repo.anaconda.com/pkgs/pro/linux-64
                          https://repo.anaconda.com/pkgs/pro/noarch
                          https://conda.anaconda.org/anaconda/linux-64
                          https://conda.anaconda.org/anaconda/noarch
                          https://conda.anaconda.org/r/linux-64
                          https://conda.anaconda.org/r/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
          package cache : /home/balter/conda/pkgs
                          /home/balter/.conda/pkgs
       envs directories : /home/balter/conda/envs
                          /home/balter/.conda/envs
               platform : linux-64
             user-agent : conda/4.5.9 requests/2.19.1 CPython/3.6.5 Linux/4.15.0-29-generic ubuntu/18.04 glibc/2.27
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False

环境信息

(microbiome) balter@balterbox:~$ conda list
# packages in environment at /home/balter/conda/envs/microbiome:
#
# Name                    Version                   Build  Channel
bioconductor-biocinstaller 1.28.0                 r3.4.1_0    bioconda
bioconductor-biocstyle    2.6.0                  r3.4.1_0    bioconda
blas                      1.1                    openblas    conda-forge
bzip2                     1.0.6                h470a237_2    conda-forge
ca-certificates           2018.4.16                     0    conda-forge
cairo                     1.14.12              he56eebe_3    conda-forge
curl                      7.61.0               h93b3f91_1    conda-forge
fontconfig                2.13.0               h0c61d53_4    conda-forge
freetype                  2.8.1                hfa320df_1    conda-forge
gettext                   0.19.8.1                      0    conda-forge
glib                      2.55.0               h464dc38_2    conda-forge
gmp                       6.1.2                hfc679d8_0    conda-forge
graphite2                 1.3.11               hfc679d8_0    conda-forge
gsl                       2.2.1           blas_openblas_4  [blas_openblas]  conda-forge
harfbuzz                  1.8.5                h2bb21d5_0    conda-forge
icu                       58.2                 hfc679d8_0    conda-forge
jpeg                      9c                   h470a237_0    conda-forge
krb5                      1.14.6                        0    conda-forge
libcurl                   7.61.0               h1ad7b7a_0
libffi                    3.2.1                         3    conda-forge
libgcc                    7.2.0                h69d50b8_2
libgcc-ng                 7.2.0                hdf63c60_3
libgfortran               3.0.0                         1
libiconv                  1.15                 h470a237_1    conda-forge
libpng                    1.6.35               ha92aebf_0    conda-forge
libssh2                   1.8.0                h5b517e9_2    conda-forge
libstdcxx-ng              7.2.0                hdf63c60_3
libtiff                   4.0.9                he6b73bb_1    conda-forge
libuuid                   1.0.3                         1    conda-forge
libxcb                    1.13                 h470a237_2    conda-forge
libxml2                   2.9.8                h422b904_2    conda-forge
ncurses                   6.1                  hfc679d8_1    conda-forge
openblas                  0.2.20                        8    conda-forge
openssl                   1.0.2o               h470a237_1    conda-forge
pandoc                    2.2.2                         1    conda-forge
pango                     1.40.14              h9105a7a_2    conda-forge
pcre                      8.41                 h470a237_2    conda-forge
pixman                    0.34.0                        2    conda-forge
pthread-stubs             0.4                  h470a237_1    conda-forge
r-ape                     5.1              r341hfc679d8_1    conda-forge
r-assertthat              0.2.0                  r3.4.1_0    conda-forge
r-backports               1.1.2            r341h470a237_1    conda-forge
r-base                    3.4.1                h4fe35fd_8    conda-forge
r-base64enc               0.1_3            r341h470a237_1    conda-forge
r-bitops                  1.0_6            r341h470a237_1    conda-forge
r-bookdown                0.7              r341h6115d3f_0    conda-forge
r-catools                 1.17.1.1         r341hfc679d8_1    conda-forge
r-cli                     1.0.0                  r3.4.1_0    conda-forge
r-cluster                 2.0.6                  r3.4.1_0    conda-forge
r-codetools               0.2_15                 r3.4.1_0    conda-forge
r-colorspace              1.3_2            r341h470a237_1    conda-forge
r-crayon                  1.3.4                  r3.4.1_0    conda-forge
r-dichromat               2.0_0                  r3.4.1_0    conda-forge
r-digest                  0.6.15           r341h470a237_1    conda-forge
r-doparallel              1.0.11                 r3.4.1_0    conda-forge
r-evaluate                0.10.1                 r3.4.1_0    conda-forge
r-fastmatch               1.1_0            r341h470a237_1    conda-forge
r-foreach                 1.4.4                  r3.4.1_0    conda-forge
r-ggplot2                 3.0.0            r341h6115d3f_0    conda-forge
r-glue                    1.3.0            r341h470a237_1    conda-forge
r-gridbase                0.4_7                  r3.4.1_0    conda-forge
r-gridextra               2.3                    r3.4.1_0    conda-forge
r-gtable                  0.2.0                  r3.4.1_0    conda-forge
r-highr                   0.7                      r341_0    conda-forge
r-htmltools               0.3.6            r341hfc679d8_1    conda-forge
r-igraph                  1.2.1            r341h26a2512_1    conda-forge
r-irlba                   2.3.2            r341h470a237_1    conda-forge
r-iterators               1.0.10                   r341_0    conda-forge
r-jsonlite                1.5              r341h470a237_1    conda-forge
r-knitr                   1.20                   r3.4.1_0    conda-forge
r-labeling                0.3                    r3.4.1_0    conda-forge
r-lattice                 0.20_34                r3.4.1_0    conda-forge
r-lazyeval                0.2.1            r341h470a237_1    conda-forge
r-magrittr                1.5                    r3.4.1_0    conda-forge
r-markdown                0.8              r341h470a237_2    conda-forge
r-mass                    7.3_50           r341hc070d10_1    conda-forge
r-matrix                  1.2_14           r341h470a237_1    conda-forge
r-mgcv                    1.8_24           r341h470a237_1    conda-forge
r-mime                    0.5              r341h470a237_1    conda-forge
r-munsell                 0.5.0                    r341_0    conda-forge
r-nlme                    3.1_131          r341ha44fe06_1    conda-forge
r-nmf                     0.21.0           r341hfc679d8_1    conda-forge
r-phangorn                2.3.1            r341hfc679d8_1    conda-forge
r-pillar                  1.2.2            r341h6115d3f_1    conda-forge
r-pkgconfig               2.0.1                  r3.4.1_0    conda-forge
r-pkgmaker                0.22                   r3.4.1_0    conda-forge
r-plyr                    1.8.4            r341hfc679d8_1    conda-forge
r-quadprog                1.5_5            r341ha44fe06_1    conda-forge
r-r6                      2.2.2                  r3.4.1_0    conda-forge
r-rcolorbrewer            1.1_2                  r3.4.1_0    conda-forge
r-rcpp                    0.12.17          r341h9d2a408_1    conda-forge
r-registry                0.5                    r3.4.1_0    conda-forge
r-reshape2                1.4.3            r341hfc679d8_1    conda-forge
r-reticulate              1.10             r341hfc679d8_0    conda-forge
r-rlang                   0.2.1            r341h470a237_1    conda-forge
r-rmarkdown               1.10             r341h6115d3f_0    conda-forge
r-rngtools                1.3.1                    r341_0    conda-forge
r-rprojroot               1.3_2                  r3.4.1_0    conda-forge
r-scales                  0.5.0            r341hfc679d8_1    conda-forge
r-stringi                 1.2.3            r341hfc679d8_1    conda-forge
r-stringr                 1.3.1                    r341_0    conda-forge
r-tibble                  1.4.2            r341h470a237_1    conda-forge
r-tinytex                 0.5              r341h6115d3f_0    conda-forge
r-utf8                    1.1.3            r341h470a237_1    conda-forge
r-viridislite             0.3.0                  r3.4.1_0    conda-forge
r-withr                   2.1.1                  r3.4.1_0    conda-forge
r-xfun                    0.3                      r341_0    conda-forge
r-xtable                  1.8_2                  r3.4.1_0    conda-forge
r-yaml                    2.1.19           r341h470a237_1    conda-forge
readline                  7.0                  haf1bffa_1    conda-forge
tk                        8.6.8                         0    conda-forge
xorg-kbproto              1.0.7                h470a237_2    conda-forge
xorg-libice               1.0.9                h470a237_4    conda-forge
xorg-libsm                1.2.2                h470a237_5    conda-forge
xorg-libx11               1.6.5                h470a237_2    conda-forge
xorg-libxau               1.0.8                h470a237_6    conda-forge
xorg-libxdmcp             1.1.2                h470a237_7    conda-forge
xorg-libxext              1.3.3                h470a237_4    conda-forge

系统信息

balter@balterbox:~$ lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description:    Ubuntu 18.04.1 LTS
Release:        18.04
Codename:       bionic

0 个答案:

没有答案