Question

我试图脚本[R 2.15.1在Windows 7中的次安装R安装就好了，但我无法弄清楚如何从同一个批处理脚本安装多个软件包（或任何批处理脚本，对于这个问题）。下面是我称之为简单R文件的脚本部分。

"%ProgramFiles%\R\R-2.15.1\bin\R.exe" CMD BATCH "%~dp0R packages for GME.R"

以下是“RME for GME.R”的内容，其中包含要安装的软件包。

install.packages("CircStats","coda","deldir","gplots","igraph","ks","odesolve","RandomFields",dep=TRUE)

鉴于documented ownership and ACLs issues with writing to the default library folder in Windows，我尝试了以下内容：

取得“C：\ Program Files \ R \ R-2.15.1 \ library”的所有权，然后运行R CMD BATCH <file>（无变更）;
在同一文件夹中为我的用户帐户授予“完全控制”权限，然后运行R CMD BATCH <file>（无更改）;
通过Rprofile.site将库文件夹更改为其他位置，然后运行R CMD BATCH <file>（无更改）;
通过Rgui install.packages("CircStats","coda","deldir","gplots","igraph","ks","odesolve","RandomFields",dep=TRUE)（工作）运行命令。

到目前为止，我没有运气使用CMD或批处理脚本来安装软件包。有什么我想念的吗？任何替代脚本包安装的方法都将非常感激。

此外，我将安装的机器适用于多个用户，因此首选系统安装和配置。

//

编辑2012-11-06：以下是.Rout文件中的错误消息：

install.packages("CircStats","coda","deldir","gplots","igraph","ks","odesolve","RandomFields",dep=TRUE)
Warning in install.packages("CircStats", "coda", "deldir", "gplots", "igraph",  :
  'lib = "coda"' is not writable
Error in install.packages("CircStats", "coda", "deldir", "gplots", "igraph",  : 
  unable to install packages
Execution halted

如果我之后执行library(coda)，则会提供Error in library(coda) : there is no package called ‘coda’。

Answer 1

odesolve软件包已弃用，已被deSolve取代。 R 2.15.1遇到此程序包时抛出错误。它可能会给你带来麻烦。这是我用于安装新R安装包的脚本。

libs=c("CircStats","coda","deldir","gplots","igraph","ks","odesolve‌","RandomFields")
type=getOption("pkgType")                           
    CheckInstallPackage <- function(packages, repos="http://cran.r-project.org",
       depend=c("Depends", "Imports", "LinkingTo", "Suggests", "Enhances"), ...) {
         installed=as.data.frame(installed.packages())
    for(p in packages) {
        if(is.na(charmatch(p, installed[,1]))) { 
          install.packages(p, repos=repos, dependencies=depend, ...) 
                    }
      }
    } 
    CheckInstallPackage(packages=libs)

Windows 7：通过脚本安装多个R包

1 个答案: