我的snakefile出现错误消息: “ MissingRuleException: 没有产生RawData / Snakefile的规则(如果使用输入函数,请确保它们不会引发意外的异常)。“
我已经尝试过了: snakemake RawData / Snakefile --use-conda
这些文件中的: config.yaml
samples :
- bulk-art_CCAAGTCT-TCATCCTT-AHFGGMBBXY_L001_R1.fastq.gz
- bulk-art_CCAAGTCT-TCATCCTT-AHFGGMBBXY_L001_R2.fastq.gz
arbitrary_parameter: 1.0
和Snakefile
configfile: "config.yaml"
rule all:
input:
"multiqc_report.html"
rule fastqc:
input:
"data/{sample}.fastq.gz"
output:
html="fastqc/{sample}.html",
zip="fastqc/{sample}.zip"
wrapper:
"0.31.1/bio/fastqc"
rule multiqc:
input:
expand("fastqc/{sample}.html", sample=config["samples"])
output:
"multiqc_report.html"
wrapper:
"0.31.1/bio/multiqc"
我尝试将这些行添加到Snakefile(https://snakemake.readthedocs.io/en/stable/_modules/snakemake/exceptions.html)中,但仍然给我第242行错误(/work/ccouture/projet_bulks/Project_MildiouSAVE.1310/第242行中的“ SyntaxError” Run_MildiouSAVE_POOL.15857 / RawData / Snakefile: 规则关键字后的预期名称或冒号。 (Snakefile,第242行)”)
你能帮我吗? 这是我第一次尝试SNAKEMAKE!