我正在尝试在Fortran 90的MPI结构中打包1D和2D双精度数组。我已经在C ++中成功完成了一个非常相似的问题,过程似乎几乎完全相同,但是我可以尽管有非常有用的MPI错误代码,但似乎无法弄清楚我在哪里出错了。
我最好的猜测是问题出在块长或位移计算上。当对MPI_RECV()的调用被注释掉时,代码将编译并运行,但对注释取消注释则会导致错误。
main.f90
program main
use mymodule
call MPI_INIT(ierr)
call MPI_COMM_SIZE(MPI_COMM_WORLD, nPROC, ierr)
call MPI_COMM_RANK(MPI_COMM_WORLD, myID, ierr)
call PASS_MESH_MPI()
call MPI_FINALIZE(ierr)
end program
mymodule.f90
module mymodule
use mpi
double precision, dimension(:,:) :: U(0:10,0:10)
double precision, dimension(:) :: r(0:10), z(0:10)
integer, public :: ierr, nPROC, nWRs, myID, stat(MPI_STATUS_SIZE)
type mytype
double precision, dimension(:,:), allocatable :: U
double precision, dimension(:), allocatable :: r
double precision, dimension(:), allocatable :: z
end type
contains
subroutine PASS_MESH_MPI()
implicit none
type(mytype) :: package
integer :: blocklen(3), types(3), myMPItype
integer(KIND=MPI_ADDRESS_KIND) :: displacement(3), base
allocate( package%U(0:10,0:10) )
allocate( package%r(0:10) )
allocate( package%z(0:10) )
call MPI_GET_ADDRESS(package%U, displacement(1), ierr)
call MPI_GET_ADDRESS(package%r, displacement(2), ierr)
call MPI_GET_ADDRESS(package%z, displacement(3), ierr)
base = displacement(1)
displacement(1) = displacement(1) - base
displacement(2) = displacement(2) - base
displacement(3) = displacement(3) - base
blocklen(1) = (11)*(11)
blocklen(2) = 11
blocklen(3) = 11
types(1) = MPI_DOUBLE_PRECISION
types(2) = MPI_DOUBLE_PRECISION
types(3) = MPI_DOUBLE_PRECISION
call MPI_TYPE_CREATE_STRUCT(3, blocklen, displacement, types, myMPItype, ierr)
call MPI_TYPE_COMMIT(myMPItype, ierr)
if ( myID .eq. 0 ) then
U(:,:) = 5
r(:) = 5
z(:) = 5
package%r(:) = r(:)
package%z(:) = z(:)
package%U(:,:) = U(:,:)
call MPI_SEND(package, 1, myMPItype, 1, 0, MPI_COMM_WORLD, ierr)
end if
if ( myID .ne. 0 ) then
call MPI_RECV(package, 1, myMPItype, 0, 0, MPI_COMM_WORLD, stat, ierr)
end if
call MPI_TYPE_FREE( myMPItype, ierr )
end subroutine
end module
makefile
COMP=mpif90
EXT=f90
CFLAGs=-Wall -Wextra -Wimplicit-interface -fPIC -fmax-errors=1 -g -fcheck=all -fbacktrace
PROG=TESTDAT.x
INPUT=input.dat
OUTPUT=output
TARGS=main.f90 mymodule.f90
OBJS=main.o mymodule.o
$(PROG): $(OBJS)
$(COMP) $(CFLAGS) -o $(PROG) $(OBJS) $(LFLAGS)
mymodule.mod: mymodule.f90 mymodule.o
$(COMP) -c $(CFLAGS) mymodule.f90
mymodule.o: mymodule.f90
$(COMP) -c $(CFLAGS) mymodule.f90
main.o: main.f90 mymodule.mod
$(COMP) -c $(CFLAGS) main.f90
run:
make
mpiexec -np 2 $(PROG)
make clean
clean:
rm -f $(PROG) *.mod *.o DONE watch
这是我尝试通过2个进程运行此代码时出现的错误。
Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
Backtrace for this error:
#0 0x1020d86fd
#1 0x1020d7a93
#2 0x7fff6f520b5c
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpiexec noticed that process rank 1 with PID 0 on node MacBook-Pro exited on signal 11 (Segmentation fault: 11).
--------------------------------------------------------------------------
我也看到了这种描述性稍差的东西。
Program received signal SIGABRT: Process abort signal.
Backtrace for this error:
#0 0x1046906fd
#1 0x10468fa93
#2 0x7fff6f520b5c
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpiexec noticed that process rank 1 with PID 0 on node MacBook-Pro exited on signal 6 (Abort trap: 6).
--------------------------------------------------------------------------
我意识到指令明确指出不要粘贴完整的文件,但是这些文件很小,我希望对那些想要自己运行代码的人来说更加方便。任何帮助将不胜感激!