import pandas as pd
import numpy as np
from bokeh.io import show, output_notebook, push_notebook
from bokeh.plotting import figure
from bokeh.models import CategoricalColorMapper, HoverTool, ColumnDataSource, Panel
from bokeh.models.widgets import CheckboxGroup, Slider, RangeSlider, Tabs
from bokeh.layouts import column, row, WidgetBox
from bokeh.palettes import Category20_16
from bokeh.application.handlers import FunctionHandler
from bokeh.application import Application
output_notebook()
def histogram_tab(webs):
def make_dataset(params_list, range_start = 0.0, range_end = 1, bin_width = 0.005):
#check to make sure the start is less than the end
assert range_start < range_end, "Start must be less than end!"
#by_params = pd.DataFrame(columns=[ ,'Max', 'Avarage', 'Min','color'])
by_params = pd.DataFrame(columns=[ 'left','right', 'proportion', 'p_proportion','p_interval', 'name', 'w_name','color'])
#
range_extent = range_end - range_start
values = ['Min', "Avarage", 'Max']
# Iterate through all the parameters
for i, para_name in enumerate(params_list):
#print para_name
# Subset to the parameter
subset = webs[para_name]
# note: subset have to be a list of values
# [webs.columns[i%6]]
# Create a histogram with specified bins and range
arr_hist, edges = np.histogram(subset,
bins = int(range_extent / bin_width),
range = [range_start, range_end])
# Divide the counts by the total to get a proportion and create df
arr_df= pd.DataFrame({'proportion': arr_hist ,
'left': edges[:-1], 'right': edges[1:]}) #/ np.sum(arr_hist)
# Format the proportion
arr_df['p_proportion'] = ['%0.00005f' % proportion for proportion in arr_df['proportion']]
# Format the interval
arr_df['p_interval'] = ['%d to %d scale' % (left, right) for left,
right in zip(arr_df['left'], arr_df['right'])]
# Assign the parameter for labels
arr_df['name'] = para_name
arr_df['w_name'] = webs['Site name']
# Color each parametr differently
arr_df['color'] = Category20_16[i]
# Add to the overall dataframe
by_params = by_params.append(arr_df)
# Overall dataframe
by_params = by_params.sort_values(['name','left'])
return ColumnDataSource(by_params)
def style(p):
# Title
p.title.align = 'center'
p.title.text_font_size ='20pt'
p.title.text_font = 'serif'
# Axis titles
p.xaxis.axis_label_text_font_size = '14pt'
p.xaxis.axis_label_text_font_style = 'bold'
p.yaxis.axis_label_text_font_size = '14pt'
p.yaxis.axis_label_text_font_style = 'bold'
# Tick labels
p.xaxis.major_label_text_font_size = '12pt'
p.yaxis.major_label_text_font_size = '12pt'
return p
def make_plot(src):
# Blank plot with correct labels
p = figure(plot_width = 700, plot_height = 700,
title = "Histogram of Parametes for the websites",
x_axis_label = 'parameters', y_axis_label = "values")
# Quad glyphs to create a histogram
p.quad(source=src, bottom =0,left = 'left', right = 'right', color ='color', top= 'proportion',fill_alpha = 0.7, hover_fill_color = 'color', legend = 'name',
hover_fill_alpha = 1.0, line_color = 'white') #top='proportion',
# Hover tool with vline mode
hover = HoverTool(tooltips=[('Parameter','@name'),
('Website','@w_name'),
('Proportion','p_proportion')
],
mode='vline')
p.add_tools(hover)
# Stypling
p = style(p)
return p
# Update function takes three default parameters
def update(attr, old, new):
# Get the list of parameter for the graph
parameter_to_plot = [para_selection.labels[i] for i in para_selection.active]
# Make a new dataset based on the selected parameter and the
# make_dataset function defined earlier
new_src = make_dataset(parameter_to_plot, range_start = 0, range_end = 1, bin_width = 0.005) # note range are not specified
# Convert dataframe to column data source
new_src = ColumnDataSource(new_src)
# Update the source used the quad glpyhs
src.data.update(new_src.data)
list_of_params = list(webs.columns[1:].unique())
list_of_params.sort()
para_selection = CheckboxGroup(labels=list_of_params, active = [0,1])
para_selection.on_change('active',update)
binwidth_select = Slider(start =0, end = 1,
step = 0.00025, value = 0.0005,
title = 'Change in parameter')
binwidth_select.on_change('value', update)
range_select = RangeSlider(start=0, end=1, value =(0,1),
step=0.00025, title = 'Change in range')
range_select.on_change('value', update)
initial_params = [para_selection.labels[i] for i in para_selection.active]
src = make_dataset(initial_params,
range_start = range_select.value[0],
range_end = range_select.value[1],
bin_width = binwidth_select.value)
p = make_plot(src)
#show(p)
# Put controls in a single element
controls = WidgetBox(para_selection, binwidth_select, range_select)
# Create a row layout
layout = row(controls, p)
# Make a tab with the layout
tab = Panel(child = layout, title = 'Histogram')
#return tab
tabs = Tabs(tabs=[tab])
webs.add_root(tabs)
# Set up an application
handler = FunctionHandler(histogram_tab(webs))
app = Application(handler)
答案 0 :(得分：1)
add_root是Document上的一种方法，您正在尝试在名为DataFrame的{{1}}上调用它，这就是为什么您收到该消息的原因。笔记本中的Bokeh应用程序的结构应如下所示：
webs请注意，在最新版本的Bokeh中，最后两行不是必需的，您可以致电：
# create a function to define the app, must accept "doc" as the parameter
def myfunc(doc):
# make Bokeh objects
# add stuff to doc
doc.add_root(stuff)
# pass the function, but *don't* execute it
handler = FunctionHandler(myfunc)
app = Application(handler)
直接。回购中有一个完整的示例：
https://github.com/bokeh/bokeh/blob/master/examples/howto/server_embed/notebook_embed.ipynb
您的代码的结构应与此非常相似。