我正在将Miniconda环境与Python 3.5配合使用，以在某些fasta对齐方式上运行Gubbins。我正在使用RHEL6
运行时
run_gubbins.py <myalignment.aln>
我不断收到错误消息
Traceback (most recent call last):
File "/home/cjreid/miniconda3/envs/gubbins/bin/run_gubbins.py", line 27, in <module>
from gubbins import common
File "/home/cjreid/miniconda3/envs/gubbins/lib/python3.5/site-packages/gubbins/__init__.py", line 15, in <module>
from gubbins import common
File "/home/cjreid/miniconda3/envs/gubbins/lib/python3.5/site-packages/gubbins/common.py", line 27, in <module>
import dendropy
ImportError: No module named 'dendropy'
我检查了环境中是否安装了dendropy
# packages in environment at /home/cjreid/miniconda3/envs/gubbins:
#
biopython 1.70 np112py35_1 bioconda
certifi 2016.2.28 py35_0
dendropy 4.4.0 py_0 bioconda
fasttree 2.1.10 0 bioconda
freetype 2.5.5 2
gubbins 2.3.1 py35_1 bioconda
jbig 2.1 0
jpeg 9b 0
libgcc 5.2.0 0
libpng 1.6.30 1
libtiff 4.0.6 3
mkl 2017.0.3 0
mmtf-python 1.0.2 py35_0 bioconda
msgpack-python 0.4.8 py35_0
nose 1.3.7 py35_1
numpy 1.12.1 py35_0
olefile 0.44 py35_0
openssl 1.0.2l 0
pillow 4.2.1 py35_0
pip 9.0.1 py35_1
python 3.5.4 0
raxml 8.2.10 0 bioconda
readline 6.2 2
reportlab 3.4.0 py35_0
setuptools 36.4.0 py35_1
sqlite 3.13.0 0
tk 8.5.18 0
wheel 0.29.0 py35_0
xz 5.2.3 0
zlib 1.2.11 0
并且我尝试更新它，但是仍然出现错误
# All requested packages already installed.
# packages in environment at /home/cjreid/miniconda3/envs/gubbins:
#
dendropy 4.4.0 py_0 bioconda
我真的不知所措，无法运行它，任何帮助将不胜感激
干杯
Cam