在Ubuntu 16.04上的R 3.4.4中无法加载SJPlot
我已经尽力想了一切。我已经卸载并重新安装了R 3.4.4，已经重新安装了RStudio。我试图加载单个依赖项。名称出现在我正在使用的存储库中。所以，现在我转向所有人。
在我的技能水平上，我已经一无所获。显然，这些依赖项没有加载。我不知道是什么原因以及如何解决它。
> install.packages("sjPlot",repos='http://cran.us.r-project.org')
Installing package into ‘/home/drz/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
also installing the dependencies ‘TMB’, ‘blme’, ‘arm’, ‘effects’, ‘ggeffects’, ‘glmmTMB’, ‘lme4’, ‘merTools’, ‘sjstats’
trying URL 'http://cran.us.r-project.org/src/contrib/TMB_1.7.14.tar.gz'
Content type 'application/x-gzip' length 606414 bytes (592 KB)
==================================================
downloaded 592 KB
trying URL 'http://cran.us.r-project.org/src/contrib/blme_1.0-4.tar.gz'
Content type 'application/x-gzip' length 35054 bytes (34 KB)
==================================================
downloaded 34 KB
trying URL 'http://cran.us.r-project.org/src/contrib/arm_1.10-1.tar.gz'
Content type 'application/x-gzip' length 78301 bytes (76 KB)
==================================================
downloaded 76 KB
trying URL 'http://cran.us.r-project.org/src/contrib/effects_4.0-2.tar.gz'
Content type 'application/x-gzip' length 2021373 bytes (1.9 MB)
==================================================
downloaded 1.9 MB
trying URL 'http://cran.us.r-project.org/src/contrib/ggeffects_0.3.4.tar.gz'
Content type 'application/x-gzip' length 239215 bytes (233 KB)
==================================================
downloaded 233 KB
trying URL 'http://cran.us.r-project.org/src/contrib/glmmTMB_0.2.1.0.tar.gz'
Content type 'application/x-gzip' length 783833 bytes (765 KB)
==================================================
downloaded 765 KB
trying URL 'http://cran.us.r-project.org/src/contrib/lme4_1.1-17.tar.gz'
Content type 'application/x-gzip' length 4103343 bytes (3.9 MB)
==================================================
downloaded 3.9 MB
trying URL 'http://cran.us.r-project.org/src/contrib/merTools_0.4.1.tar.gz'
Content type 'application/x-gzip' length 476671 bytes (465 KB)
==================================================
downloaded 465 KB
trying URL 'http://cran.us.r-project.org/src/contrib/sjstats_0.15.0.tar.gz'
Content type 'application/x-gzip' length 339472 bytes (331 KB)
==================================================
downloaded 331 KB
trying URL 'http://cran.us.r-project.org/src/contrib/sjPlot_2.4.1.tar.gz'
Content type 'application/x-gzip' length 776902 bytes (758 KB)
==================================================
downloaded 758 KB
* installing *source* package ‘TMB’ ...
** package ‘TMB’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/library/Matrix/include" -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/RcppEigen/include" -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c external_metis.c -o external_metis.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/library/Matrix/include" -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/RcppEigen/include" -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/library/Matrix/include" -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/RcppEigen/include" -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c local_stubs.c -o local_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/library/Matrix/include" -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/RcppEigen/include" -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c solve_subset.c -o solve_subset.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/library/Matrix/include" -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/RcppEigen/include" -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o TMB.so external_metis.o init.o local_stubs.o solve_subset.o utils.o -llapack -lblas -lgfortran -lm -lquadmath -fopenmp -L/usr/lib/R/lib -lR
installing to /home/drz/R/x86_64-pc-linux-gnu-library/3.4/TMB/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Building example simple
g++ -I/usr/share/R/include -DNDEBUG -I/home/drz/R/x86_64-pc-linux-gnu-library/3.4/TMB/include -I -DTMB_SAFEBOUNDS -DLIB_UNLOAD=R_unload_simple -DTMB_LIB_INIT=R_init_simple -I"/usr/lib/R/library/Matrix/include" -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/RcppEigen/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c simple.cpp -o simple.o
In file included from simple.cpp:2:0:
/home/drz/R/x86_64-pc-linux-gnu-library/3.4/TMB/include/TMB.hpp:53:23: fatal error: Eigen/Dense: No such file or directory
compilation terminated.
/usr/lib/R/etc/Makeconf:168: recipe for target 'simple.o' failed
make: *** [simple.o] Error 1
Timing stopped at: 0.028 0.004 0.047
Error: package or namespace load failed for ‘TMB’:
.onAttach failed in attachNamespace() for 'TMB', details:
call: compile(paste0(name, ".cpp"), ...)
error: Compilation failed
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/drz/R/x86_64-pc-linux-gnu-library/3.4/TMB’
Warning in install.packages :
installation of package ‘TMB’ had non-zero exit status
* installing *source* package ‘lme4’ ...
** package ‘lme4’ successfully unpacked and MD5 sums checked
** libs
g++ -I/usr/share/R/include -DNDEBUG -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/RcppEigen/include" -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c external.cpp -o external.o
In file included from external.cpp:8:0:
predModule.h:12:23: fatal error: RcppEigen.h: No such file or directory
compilation terminated.
/usr/lib/R/etc/Makeconf:168: recipe for target 'external.o' failed
make: *** [external.o] Error 1
ERROR: compilation failed for package ‘lme4’
* removing ‘/home/drz/R/x86_64-pc-linux-gnu-library/3.4/lme4’
Warning in install.packages :
installation of package ‘lme4’ had non-zero exit status
ERROR: dependency ‘lme4’ is not available for package ‘blme’
* removing ‘/home/drz/R/x86_64-pc-linux-gnu-library/3.4/blme’
Warning in install.packages :
installation of package ‘blme’ had non-zero exit status
ERROR: dependency ‘lme4’ is not available for package ‘arm’
* removing ‘/home/drz/R/x86_64-pc-linux-gnu-library/3.4/arm’
Warning in install.packages :
installation of package ‘arm’ had non-zero exit status
ERROR: dependency ‘lme4’ is not available for package ‘effects’
* removing ‘/home/drz/R/x86_64-pc-linux-gnu-library/3.4/effects’
Warning in install.packages :
installation of package ‘effects’ had non-zero exit status
ERROR: dependencies ‘TMB’, ‘lme4’ are not available for package ‘glmmTMB’
* removing ‘/home/drz/R/x86_64-pc-linux-gnu-library/3.4/glmmTMB’
Warning in install.packages :
installation of package ‘glmmTMB’ had non-zero exit status
ERROR: dependencies ‘arm’, ‘lme4’, ‘blme’ are not available for package ‘merTools’
* removing ‘/home/drz/R/x86_64-pc-linux-gnu-library/3.4/merTools’
Warning in install.packages :
installation of package ‘merTools’ had non-zero exit status
ERROR: dependencies ‘lme4’, ‘glmmTMB’ are not available for package ‘sjstats’
* removing ‘/home/drz/R/x86_64-pc-linux-gnu-library/3.4/sjstats’
Warning in install.packages :
installation of package ‘sjstats’ had non-zero exit status
ERROR: dependencies ‘effects’, ‘sjstats’ are not available for package ‘ggeffects’
* removing ‘/home/drz/R/x86_64-pc-linux-gnu-library/3.4/ggeffects’
Warning in install.packages :
installation of package ‘ggeffects’ had non-zero exit status
ERROR: dependencies ‘arm’, ‘effects’, ‘ggeffects’, ‘glmmTMB’, ‘lme4’, ‘merTools’, ‘sjstats’ are not available for package ‘sjPlot’
* removing ‘/home/drz/R/x86_64-pc-linux-gnu-library/3.4/sjPlot’
Warning in install.packages :
installation of package ‘sjPlot’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpPwofOm/downloaded_packages’