我想在新的AWS账户上安装一些Bioconductor软件包。但我不断收到错误（见下面的输出）。
使用install.packages（）安装R软件包（例如，readr，ggplot2，haven）可以正常工作。
R version 3.4.1 (2017-06-30) -- "Single Candle" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-redhat-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
> source("https://bioconductor.org/biocLite.R") Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help
> biocLite("GEOquery") BioC_mirror: https://bioconductor.org Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.1 (2017-06-30). Installing package(s) ‘GEOquery’ also installing the dependencies ‘curl’, ‘openssl’, ‘httr’, ‘xml2’
trying URL 'https://cran.rstudio.com/src/contrib/curl_3.1.tar.gz' Content type 'application/x-gzip' length 366086 bytes (357 KB)
================================================== downloaded 357 KB
trying URL 'https://cran.rstudio.com/src/contrib/openssl_1.0.1.tar.gz' Content type 'application/x-gzip' length 1194261 bytes (1.1 MB)
================================================== downloaded 1.1 MB
trying URL 'https://cran.rstudio.com/src/contrib/httr_1.3.1.tar.gz' Content type 'application/x-gzip' length 147593 bytes (144 KB)
================================================== downloaded 144 KB
trying URL 'https://cran.rstudio.com/src/contrib/xml2_1.2.0.tar.gz' Content type 'application/x-gzip' length 251614 bytes (245 KB)
================================================== downloaded 245 KB
trying URL 'https://bioconductor.org/packages/3.6/bioc/src/contrib/GEOquery_2.46.15.tar.gz' Content type 'application/x-gzip' length 13717934 bytes (13.1 MB)
================================================== downloaded 13.1 MB
* installing *source* package ‘curl’ ...
** package ‘curl’ successfully unpacked and MD5 sums checked Package libcurl was not found in the pkg-config search path. Perhaps you should add the directory containing `libcurl.pc' to the PKG_CONFIG_PATH environment variable No package 'libcurl' found Package libcurl was not found in the pkg-config search path. Perhaps you should add the directory containing `libcurl.pc' to the PKG_CONFIG_PATH environment variable No package 'libcurl' found Using PKG_CFLAGS= Using PKG_LIBS=-lcurl
------------------------- ANTICONF ERROR --------------------------- Configuration failed because libcurl was not found. Try installing: * deb: libcurl4-openssl-dev (Debian, Ubuntu, etc) * rpm: libcurl-devel (Fedora, CentOS, RHEL) * csw: libcurl_dev (Solaris) If libcurl is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
-------------------------------------------------------------------- ERROR: configuration failed for package ‘curl’
* removing ‘/home/ec2-user/R/x86_64-redhat-linux-gnu-library/3.4/curl’
* installing *source* package ‘openssl’ ...
** package ‘openssl’ successfully unpacked and MD5 sums checked Using PKG_CFLAGS=
------------------------- ANTICONF ERROR --------------------------- Configuration failed because openssl was not found. Try installing: * deb: libssl-dev (Debian, Ubuntu, etc) * rpm: openssl-devel (Fedora, CentOS, RHEL) * csw: libssl_dev (Solaris) * brew: openssl@1.1 (Mac OSX) If openssl is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a openssl.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
-------------------------------------------------------------------- ERROR: configuration failed for package ‘openssl’
* removing ‘/home/ec2-user/R/x86_64-redhat-linux-gnu-library/3.4/openssl’
* installing *source* package ‘xml2’ ...
** package ‘xml2’ successfully unpacked and MD5 sums checked Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/home/ec2-user/anaconda3/include/libxml2
-I/home/ec2-user/anaconda3/include Using PKG_LIBS=-L/home/ec2-user/anaconda3/lib -lxml2
-L/home/ec2-user/anaconda3/lib -lz -L/home/ec2-user/anaconda3/lib -llzma -L/home/ec2-user/anaconda3/lib -L/home/ec2-user/anaconda3/lib -licui18n -licuuc -licudata -lm -ldl
** libs g++ -m64 -I/usr/include/R -DNDEBUG -I../inst/include -I/home/ec2-user/anaconda3/include/libxml2 -I/home/ec2-user/anaconda3/include -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c RcppExports.cpp -o RcppExports.o g++ -m64 -I/usr/include/R -DNDEBUG -I../inst/include -I/home/ec2-user/anaconda3/include/libxml2 -I/home/ec2-user/anaconda3/include -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c connection.cpp -o connection.o g++ -m64 -I/usr/include/R -DNDEBUG -I../inst/include -I/home/ec2-user/anaconda3/include/libxml2 -I/home/ec2-user/anaconda3/include -I"/usr/lib64/R/library/Rcpp/include" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c xml2_doc.cpp -o xml2_doc.o packet_write_wait: Connection to XX.XXX.XXX.XXX port XX: Broken pipe
答案 0 :(得分：2)
错误似乎解释了这个问题 - 它无法找到libcurl或openssl。尝试在该实例上安装这些软件包（不确定您正在运行的操作系统）。
Configuration failed because libcurl was not found.
Try installing:
* deb: libcurl4-openssl-dev (Debian, Ubuntu, etc)
* rpm: libcurl-devel (Fedora, CentOS, RHEL)
* csw: libcurl_dev (Solaris)
If libcurl is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a libcurl.pc file.
If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
Configuration failed because openssl was not found.
Try installing:
* deb: libssl-dev (Debian, Ubuntu, etc)
* rpm: openssl-devel (Fedora, CentOS, RHEL)
* csw: libssl_dev (Solaris)
* brew: openssl@1.1 (Mac OSX)
If openssl is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a openssl.pc file.
If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'