Scipy interpolate.splprep错误“输入无效”

时间:2017-12-22 23:29:42

标签: python scipy interpolation

我正在尝试使用SciPy的interpolate.splprep方法将曲线插入到一组(x,y)点,使用此StackOverflow answer中的步骤。我的代码(包含数据)如下所示。 请原谅我使用这个大型数据集,因为代码在不同的数据集上运行得非常好。请滚动到底部以查看实现。

#!/usr/bin/env python3

import numpy as np
import matplotlib.pyplot as plt
from scipy import interpolate
# -----------------------------------------------------------------------------
# Data

xp=np.array([ -1.19824526e-01,  -1.19795807e-01,  -1.22298912e-01,
        -1.24784611e-01,  -1.27233423e-01,  -1.27048456e-01,
        -1.29424259e-01,  -1.31781573e-01,  -1.34102825e-01,
        -1.36386619e-01,  -1.41324999e-01,  -1.43569618e-01,
        -1.48471481e-01,  -1.53300646e-01,  -1.55387133e-01,
        -1.57436481e-01,  -1.53938796e-01,  -1.58562951e-01,
        -1.53139517e-01,  -1.50456275e-01,  -1.49637920e-01,
        -1.48774455e-01,  -1.47843528e-01,  -1.44278335e-01,
        -1.43299274e-01,  -1.39716798e-01,  -1.36111285e-01,
        -1.32534352e-01,  -1.28982866e-01,  -1.25433151e-01,
        -1.21912263e-01,  -1.16106245e-01,  -1.12701128e-01,
        -1.09303316e-01,  -1.05947571e-01,  -1.00467194e-01,
        -9.72083398e-02,  -9.39822094e-02,  -9.08033710e-02,
        -8.96420533e-02,  -8.65053261e-02,  -8.34162875e-02,
        -8.03788778e-02,  -7.73929193e-02,  -7.62032638e-02,
        -7.32655732e-02,  -7.03760465e-02,  -6.91826390e-02,
        -6.63378816e-02,  -6.35537275e-02,  -6.08302060e-02,
        -5.96426925e-02,  -5.69864087e-02,  -5.43931715e-02,
        -5.18641746e-02,  -4.93958173e-02,  -4.82415854e-02,
        -4.58486281e-02,  -4.35196817e-02,  -4.01162919e-02,
        -3.79466513e-02,  -3.48161871e-02,  -3.18596693e-02,
        -2.90650417e-02,  -2.64251761e-02,  -2.31429101e-02,
        -1.94312163e-02,  -1.73997964e-02,  -1.55068323e-02,
        -1.43163160e-02,  -1.31800087e-02,  -1.20987991e-02,
        -1.10708190e-02,  -1.05380016e-02,  -9.58116017e-03,
        -9.06399242e-03,  -8.54450012e-03,  -7.67847396e-03,
        -7.17608354e-03,  -6.67181154e-03,  -5.89474349e-03,
        -5.40878144e-03,  -4.92121197e-03,  -4.43202070e-03,
        -3.94148294e-03,  -3.44986011e-03,  -2.82410814e-03,
        -2.35269319e-03,  -1.88058008e-03,  -1.47393691e-03,
        -9.78376399e-04,  -4.82633521e-04,   1.33099164e-05,
         5.09212801e-04,   1.05098855e-03,   1.56929991e-03,
         2.08706303e-03,   2.72055571e-03,   3.26012954e-03,
         3.79870854e-03,   4.33573131e-03,   4.87172652e-03,
         5.40640816e-03,   5.93914581e-03,   6.47004490e-03,
         6.99921852e-03,   7.52610639e-03,   7.70592714e-03,
         8.20559501e-03,   8.70268809e-03,   9.19766855e-03,
         9.68963219e-03,   1.01781695e-02,   1.01960805e-02,
         1.06577199e-02,   1.11156340e-02,   1.15703286e-02,
         1.20215921e-02,   1.24693015e-02,   1.29129042e-02,
         1.33526781e-02,   1.37884367e-02,   1.42204360e-02,
         1.46473802e-02,   1.50699789e-02,   1.54884533e-02,
         1.59020551e-02,   1.63103362e-02,   8.12110387e-02,
         7.80794051e-02,   1.67140103e-02,   8.31537241e-02,
         7.99472912e-02,   7.99472912e-02,   7.67983984e-02,
         1.71128723e-02,   8.50656342e-02,   8.17851028e-02,
         7.85638577e-02,   7.53861405e-02,   1.75061328e-02,
         8.19411806e-02,   7.38391281e-02,   1.78939640e-02,
         8.70866930e-02,   8.36940292e-02,   8.03586974e-02,
         7.70534244e-02,   7.70534244e-02,   7.38013540e-02,
         7.38013540e-02,   7.06147796e-02,   1.82766038e-02,
         8.54279559e-02,   8.20231372e-02,   7.53294330e-02,
         7.20765174e-02,   1.86539411e-02,   8.36524496e-02,
         7.85095832e-02,   7.51592888e-02,   7.18792721e-02,
         1.90250409e-02,   7.82997201e-02,   7.49183992e-02,
         7.49183992e-02,   7.16144248e-02,   7.16144248e-02,
         6.83771846e-02,   1.93904576e-02,   7.46192919e-02,
         7.12865685e-02,   7.12865685e-02,   6.80175748e-02,
         1.97501330e-02,   7.42568965e-02,   7.08996495e-02,
         7.08996495e-02,   6.75887344e-02,   2.01042729e-02,
         7.38173451e-02,   6.70923613e-02,   2.13903228e-02,
         7.50479910e-02,   6.82108239e-02,   5.69753762e-02,
         5.24303656e-02,   5.24303656e-02,   4.52683211e-02,
         4.52683211e-02,   4.25493203e-02,   2.17470907e-02,
         7.45062992e-02,   6.76173090e-02,   6.76173090e-02,
         6.42925100e-02,   6.42925100e-02,   5.94649095e-02,
         5.94649095e-02,   3.92303424e-02,   2.20977481e-02,
         7.21341379e-02,   3.72338037e-02,   2.24415025e-02,
         7.14448972e-02,   3.40025442e-02,   2.27777176e-02,
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         6.81719132e-02,   3.62534788e-02,   2.44798556e-02,
         6.56110398e-02,   3.80586628e-02,   3.29287629e-02,
         2.93070471e-02,   2.48093588e-02,   6.13326924e-02,
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         2.51312268e-02,   5.38330011e-02,   3.76841669e-02,
         3.50540735e-02,   2.77018960e-02,   2.65615352e-02,
         5.28838088e-02,   3.81396763e-02,   3.54777506e-02,
         2.80364970e-02,   2.68822682e-02,   5.03377702e-02,
         3.85814254e-02,   3.58887890e-02,   4.93316503e-02,
         4.04098395e-02,   3.62892096e-02,   4.67615526e-02,
         4.22828625e-02,   3.80435955e-02,   3.84376145e-02,
         4.02332775e-02,   4.06156847e-02,   4.24553741e-02,
         4.43352031e-02,   4.47040511e-02,   4.66233682e-02,
         4.69790035e-02,   4.89341212e-02,   5.09256192e-02,
         5.12584867e-02,   5.32790231e-02,   5.35890744e-02,
         5.38831411e-02,   5.41625645e-02,   5.44267004e-02,
         5.46700348e-02,   5.48984863e-02,   5.51117932e-02,
         5.53082440e-02,   5.54849716e-02,   5.56464539e-02,
         5.57928396e-02,   5.59201893e-02,   5.60294455e-02,
         5.61233441e-02,   5.62020138e-02,   5.62604489e-02,
         5.63017253e-02,   5.63275468e-02,   5.63341408e-02,
         5.63226424e-02,   5.62957310e-02,   5.62533699e-02,
         5.61937444e-02,   5.61140110e-02,   5.60191106e-02,
         5.59087917e-02,   5.57801898e-02,   5.56328560e-02,
         5.54704141e-02,   5.70775198e-02,   5.68728844e-02,
         5.66515897e-02,   5.64149230e-02,   5.61622287e-02,
         5.76630266e-02,   5.73643873e-02,   5.70502787e-02,
         5.67190716e-02,   5.63668473e-02,   5.59997391e-02,
         5.73489998e-02,   5.69355151e-02,   5.65029189e-02,
         5.77751241e-02,   5.72977910e-02,   5.67990710e-02,
         5.79863269e-02,   5.74393835e-02,   5.68773454e-02,
         5.62926261e-02,   5.56922722e-02,   5.50771272e-02,
         5.44454686e-02,   5.37935810e-02,   5.31273003e-02,
         5.24468411e-02,   5.17483760e-02,   5.10330229e-02,
         5.03036776e-02,   4.95607328e-02,   4.87997085e-02,
         4.80238054e-02,   4.72347342e-02,   4.64331616e-02,
         4.56132865e-02,   4.47805574e-02,   4.39358955e-02,
         4.30782240e-02,   4.22044750e-02,   4.01052073e-02,
         3.92354976e-02,   3.83523540e-02,   3.74567873e-02,
         3.65508593e-02,   3.45751478e-02,   3.36740998e-02,
         3.27625023e-02,   3.18417381e-02,   3.09129121e-02,
         2.90665673e-02,   2.81454989e-02,   2.72171846e-02,
         2.62807950e-02,   2.53342284e-02,   2.43816409e-02,
         2.34221736e-02,   2.24541496e-02,   2.08179757e-02,
         1.98678098e-02,   1.89113740e-02,   1.79488243e-02,
         1.69806146e-02,   1.65158032e-02,   1.55075714e-02,
         1.44932106e-02,   1.34746855e-02,   1.24525920e-02,
         1.14268067e-02,   1.03968750e-02,   9.36414487e-03,
         8.58823755e-03,   7.51804527e-03,   6.44485601e-03,
         5.37002690e-03,   4.29398700e-03,   3.31511044e-03,
         2.20302298e-03,   1.09069996e-03,  -2.27320426e-05,
        -1.16892664e-03,  -2.31490869e-03,  -3.46060569e-03,
        -4.74178052e-03,  -5.91852523e-03,  -7.09360822e-03,
        -8.26683115e-03,  -9.43736653e-03,  -1.06042682e-02,
        -1.17686419e-02,  -1.33107457e-02,  -1.45010352e-02,
        -1.56869180e-02,  -1.68693838e-02,  -1.80464175e-02,
        -1.97732638e-02,  -2.09722818e-02,  -2.21650612e-02,
        -2.40185758e-02,  -2.52303300e-02,  -2.71803154e-02,
        -2.84115598e-02,  -3.04489552e-02,  -3.16936647e-02,
        -3.29299358e-02,  -3.50861051e-02,  -3.63332401e-02,
        -3.85745058e-02,  -3.98348648e-02,  -4.21660006e-02,
        -4.34302610e-02,  -4.46836493e-02,  -4.59254575e-02,
        -4.71530952e-02,  -4.96209305e-02,  -4.95594200e-02,
        -5.07435074e-02,  -5.19101301e-02,  -5.16977894e-02,
        -5.14280802e-02,  -5.11057669e-02,  -5.07251169e-02,
        -5.16985297e-02,  -5.12126585e-02,  -5.06852098e-02,
        -5.15589749e-02,  -5.09397027e-02,  -5.17615499e-02,
        -5.10672514e-02,  -5.18313966e-02,  -5.25816754e-02,
        -5.33179227e-02,  -5.40360028e-02,  -5.47358953e-02,
        -5.54213064e-02,  -5.77400978e-02,  -5.84092053e-02,
        -5.90603644e-02,  -6.14284845e-02,  -6.38379284e-02,
        -6.62872262e-02,  -6.69166162e-02,  -6.93865431e-02,
        -7.18947674e-02,  -7.44284962e-02,  -7.69969804e-02,
        -7.96063191e-02,  -8.01834105e-02,  -8.28053535e-02,
        -8.54623715e-02,  -8.59961071e-02,  -8.86660185e-02,
        -8.91520913e-02,  -9.18335218e-02,  -9.45402708e-02,
        -9.49610563e-02,  -9.76401856e-02,  -1.00332460e-01,
        -1.03032191e-01,  -1.03358935e-01,  -1.06040606e-01,
        -1.06322470e-01,  -1.08984284e-01,  -1.09195131e-01,
        -1.11833426e-01,  -1.11994247e-01,  -1.14596404e-01,
        -1.17192554e-01,  -1.17248317e-01])

yp = np.array([ -3.90948536e-05,  -2.12984775e-03,  -4.31095583e-03,
        -6.58019633e-03,  -8.93758156e-03,  -1.11568100e-02,
        -1.36444162e-02,  -1.62222092e-02,  -1.88895170e-02,
        -2.16446498e-02,  -2.49629308e-02,  -2.79508857e-02,
        -3.16029501e-02,  -3.54376380e-02,  -3.87881494e-02,
        -4.22310942e-02,  -4.41873802e-02,  -4.85246067e-02,
        -4.68663315e-02,  -4.60459599e-02,  -4.86676408e-02,
        -5.12750434e-02,  -5.38586293e-02,  -5.54310799e-02,
        -5.79452426e-02,  -5.93547929e-02,  -6.06497762e-02,
        -6.18505946e-02,  -6.29584706e-02,  -6.39609234e-02,
        -6.48713094e-02,  -6.44090476e-02,  -6.51181556e-02,
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        -6.56184758e-02,  -6.58578685e-02,  -6.60229010e-02,
        -6.76012689e-02,  -6.76366183e-02,  -6.76004442e-02,
        -6.74972483e-02,  -6.73282385e-02,  -6.86657097e-02,
        -6.83738036e-02,  -6.80140059e-02,  -6.92366190e-02,
        -6.87491258e-02,  -6.82071471e-02,  -6.76134579e-02,
        -6.86669494e-02,  -6.79695621e-02,  -6.72259327e-02,
        -6.64391135e-02,  -6.56069234e-02,  -6.64563885e-02,
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        -6.07850085e-02,  -5.80009440e-02,  -5.52383021e-02,
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        -2.81405467e-02,  -2.82051366e-02,  -2.69913041e-02,
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        -1.03723227e-01,  -9.96804013e-02,  -9.57062055e-02,
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         4.05355227e-03,   2.00672241e-03])

# -----------------------------------------------------------------------------
# Use scipy to interpolate.
xp = np.r_[xp, xp[0]]
yp = np.r_[yp, yp[0]]
tck, u = interpolate.splprep([xp, yp], s=0, k=1, per=True)
xi, yi = interpolate.splev(np.linspace(0, 1, 1000), tck)

# -----------------------------------------------------------------------------
# Plot result
fig = plt.figure()
ax = plt.subplot(111)
ax.plot(xp, yp, '.', markersize=2)
ax.plot(xi, yi, alpha=0.5)

plt.show()

我在一台计算机上遇到以下错误(MacOS),

--->      tck, u = interpolate.splprep([xp, yp], s=0, k=1, per=True)
SystemError: <built-in function _parcur> returned NULL without setting an error

这个错误在另一台机器上(Ubuntu),

---->     tck, u = interpolate.splprep([xp, yp], s=0, k=1, per=True)
ValueError: Invalid inputs.

interpolate.splprep使用来自FITPACK的FORTRAN parcur例程(来自documentation)。

我的问题是 -

  1. 为什么代码适用于不同的数据集?例如xp = np.array([0.1, 0.2, 0.3, 0.4]) yp = np.array([-0.1, -0.3, -0.4, 0.2])而不是这个特别的?这个错误是什么意思?
  2. 如何让这个工作? (使用此方法或任何其他方法)即内插曲线或过滤异常值...
  3. 出于好奇,为什么错误机器(和操作系统)依赖?
  4. 这是绘制时数据的外观,我想你可以猜出我想插入哪条曲线(如果可能的话我想删除哪些异常值)

    enter image description here

1 个答案:

答案 0 :(得分:2)

如果两个连续输入相同,Fitpack就适合。错误发生得足够深,这取决于库如何编译和链接,因此错误的分类。

例如,xp[147:149], yp[147:149](以及其他几个):

(array([ 0.07705342,  0.07705342]), array([-0.09176826, -0.09176826])) 

没关系:

okay = np.where(np.abs(np.diff(xp)) + np.abs(np.diff(yp)) > 0)
xp = np.r_[xp[okay], xp[-1], xp[0]]
yp = np.r_[yp[okay], yp[-1], yp[0]]
#  the rest of your code

我添加了最后一点,因为diff的输出总是一个元素更短,所以最后一个需要手动包含。 (然后当然,你再次将第0点作为周期性)

切断奇怪的部分

这是我试图切断数据集的奇怪挤压部分。它使用a Gaussian filter from ndimage。这次保留原点xp,yp;过滤后的是xn,yn。

jump = np.sqrt(np.diff(xp)**2 + np.diff(yp)**2) 
smooth_jump = ndimage.gaussian_filter1d(jump, 5, mode='wrap')  # window of size 5 is arbitrary
limit = 2*np.median(smooth_jump)    # factor 2 is arbitrary
xn, yn = xp[:-1], yp[:-1]
xn = xn[(jump > 0) & (smooth_jump < limit)]
yn = yn[(jump > 0) & (smooth_jump < limit)]

因此,我们不仅删除重复点,还删除值过多跳转的点。其余的和以前一样,插值是由xn,yn构建的。我绘制原始点以与新(红色)曲线进行比较:

ax.plot(xp, yp, 'o', markersize=2)
ax.plot(xi, yi, 'r', alpha=0.5)

cutoff