Question

使用Spark_sklearn GridSearchCV作为内部cv执行嵌套交叉验证，并将sklearn cross_validate / cross_val_score作为外部cv执行＆＃34;您似乎尝试从广播变量，操作或转换＆＃34;中引用SparkContext。错误。

inner_cv = StratifiedKFold(n_splits=2, shuffle=True, random_state=42)
outer_cv = StratifiedKFold(n_splits=3, shuffle=True, random_state=42)
scoring_metric = ['roc_auc', 'average_precision', 'precision']
gs = GridSearchCV(sparkcontext, estimator=RandomForestClassifier(
                                          class_weight='balanced_subsample', n_jobs=-1),
                  param_grid=[{"max_depth": [5], "max_features": [.5, .8], 
                               "min_samples_split": [2], "min_samples_leaf": [1, 2, 5, 10], 
                               "bootstrap": [True, False], "criterion": ["gini", "entropy"], 
                               "n_estimators": [300]}], 
                  scoring=scoring_metric, cv=inner_cv, verbose=verbose, n_jobs=-1, 
                  refit='roc_auc', return_train_score=False)
scores = cross_validate(gs, X, y, cv=outer_cv, scoring=scoring_metric, n_jobs=-1, 
                        return_train_score=False)

我已尝试将n_jobs=-1设置为n_jobs=1以删除基于joblib的并行性，然后重试但仍会产生相同的异常。

异常：您似乎尝试从广播变量，操作或转换引用SparkContext。 SparkContext只能在驱动程序上使用，而不能在工作程序上运行的代码中使用。有关更多信息，请参阅SPARK-5063。

Complete Traceback (most recent call last):
  File "model_evaluation.py", line 350, in <module>
    main()
  File "model_evaluation.py", line 269, in main
    scores = cross_validate(gs, X, y, cv=outer_cv, scoring=scoring_metric, n_jobs=-1, return_train_score=False)
  File "../python27/lib/python2.7/site-packages/sklearn/model_selection/_validation.py", line 195, in cross_validate
    for train, test in cv.split(X, y, groups))
  File "../python27/lib/python2.7/site-packages/sklearn/externals/joblib/parallel.py", line 779, in __call__
    while self.dispatch_one_batch(iterator):
  File "../python27/lib/python2.7/site-packages/sklearn/externals/joblib/parallel.py", line 620, in dispatch_one_batch
    tasks = BatchedCalls(itertools.islice(iterator, batch_size))
  File "../python27/lib/python2.7/site-packages/sklearn/externals/joblib/parallel.py", line 127, in __init__
    self.items = list(iterator_slice)
  File "../python27/lib/python2.7/site-packages/sklearn/model_selection/_validation.py", line 195, in <genexpr>
    for train, test in cv.split(X, y, groups))
  File "../python27/lib/python2.7/site-packages/sklearn/base.py", line 61, in clone
    new_object_params[name] = clone(param, safe=False)
  File "../python27/lib/python2.7/site-packages/sklearn/base.py", line 52, in clone
    return copy.deepcopy(estimator)
  File "/usr/local/lib/python2.7/copy.py", line 182, in deepcopy
    rv = reductor(2)
  File "/usr/local/lib/spark/python/pyspark/context.py", line 279, in __getnewargs__
    "It appears that you are attempting to reference SparkContext from a broadcast "
Exception: It appears that you are attempting to reference SparkContext from a broadcast 
variable, action, or transformation. SparkContext can only be used on the driver, not 
in code that it run on workers. For more information, see SPARK-5063.

编辑：似乎问题是sklearn cross_validate（）以类似于挑选PySpark GridsearchCV估计器不允许的估计器对象的方式克隆每个拟合的估计器，因为SparkContext（）对象不能/不应该被pickle。那么我们如何正确克隆估算器？

Answer 1

我终于找到了解决方案。当scikit-learn clone（）函数尝试深度检查SparkContext对象时，会发生此问题。我使用的解决方案有点hacky，如果有更好的解决方案，我肯定会采取另一种方式，但它确实有效。导入复制类并覆盖deepcopy（）函数，以便在看到SparkContext对象时忽略它。

# Mock the deep-copy function to ignore copying sparkcontext objects
# Helps avoid pickling error or broadcast variable errors
import copy
_deepcopy = copy.deepcopy

def mock_deepcopy(*args, **kwargs):
    if isinstance(args[0], SparkContext):
        return args[0]
    return _deepcopy(*args, **kwargs)

copy.deepcopy = mock_deepcopy

所以现在它不会尝试复制SparkContext对象，所有似乎都能正常工作。

使用Spark_sklearn GridSearchCV进行嵌套交叉验证会导致SPARK-5063错误

1 个答案: