Rstudio如何让stringi包安装工作?所有好,直到dyn.load完全失败

时间:2017-10-13 18:22:41

标签: r rstudio stringi

在更新到最新版本后结束:我的Ubuntu 16.04LTS更新/升级,我的R版本,我的Rstudio服务器版本,我的libicu-dev版本,验证了anaconda提供我的python而不是我的R语言。还有什么可以帮到你?这个stringi包也可能是我的新问题的根源(之前没有问题)无法创建r markdown文档(看起来像Knittr使用stringi),jupyter笔记本使用R语言,无法安装ggplot2等等。

g ++已经是最新版本(4:5.3.1-1ubuntu1)

libicu-dev已经是最新版本(55.1-7ubuntu0.2)

这是rstudio控制台输出(长):

R version 3.4.2 (2017-09-28) -- "Short Summer"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> install.packages("stringi")
Installing package into ‘/home/ga/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/stringi_1.1.5.tar.gz'
Content type 'application/x-gzip' length 3645872 bytes (3.5 MB)
==================================================
downloaded 3.5 MB

* installing *source* package ‘stringi’ ...
** package ‘stringi’ successfully unpacked and MD5 sums checked
checking for local ICUDT_DIR... icu55/data
checking for R_HOME... /usr/lib/R
checking for R... /usr/lib/R/bin/R
checking for R >= 3.1.0 for C++11 use... yes
checking for R < 3.4.0 for CXX1X flag use... no
checking for cat... /bin/cat
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++11 accepts -g... yes
checking whether the C++ compiler supports the long long type... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler supports Standard Template Library... yes
checking whether std::map is available... yes
checking for pkg-config... /usr/bin/pkg-config
checking with pkg-config for the system ICU4C... 55.1
checking for ICU4C >= 52... yes
checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done
checking whether we may build an ICU4C-based project... yes
checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes
checking for available ICU data library (ucnv, uloc, utrans)... yes
checking for available ICU data library (ucol)... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/uconfig_local.h
config.status: creating src/install.libs.R

*** stringi configure summary:
    ICU_FOUND=1
    STRINGI_CXXSTD=CXX_STD=CXX11
    STRINGI_CFLAGS=   -fpic
    STRINGI_CPPFLAGS=-I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H
    STRINGI_CXXFLAGS=   -fpic
    STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu  
    STRINGI_LIBS=-licui18n -licuuc -licudata  

*** compiler settings used:
    CC=gcc -std=gnu99
    CPP=g++ -E
    LD=g++
    CFLAGS=-I/usr/lib/x86_64-linux-gnu -fpic  
    CPPFLAGS=   -UDEBUG -DNDEBUG
    CXX=g++ -std=gnu++11
    CXXFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic  
    LDFLAGS=  
    LIBS=  

** libs
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_brkiter.cpp -o stri_brkiter.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_collator.cpp -o stri_collator.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_common.cpp -o stri_common.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_compare.cpp -o stri_compare.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_base.cpp -o stri_container_base.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o

...(剪断)...

g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_in.cpp -o stri_search_in.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_other_replace.cpp -o stri_search_other_replace.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_other_split.cpp -o stri_search_other_split.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_count.cpp -o stri_search_regex_count.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_match.cpp -o stri_search_regex_match.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_split.cpp -o stri_search_regex_split.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_sort.cpp -o stri_sort.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_stats.cpp -o stri_stats.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_stringi.cpp -o stri_stringi.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_sub.cpp -o stri_sub.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_test.cpp -o stri_test.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_zone.cpp -o stri_time_zone.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_calendar.cpp -o stri_time_calendar.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_symbols.cpp -o stri_time_symbols.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_time_format.cpp -o stri_time_format.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_casemap.cpp -o stri_trans_casemap.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_other.cpp -o stri_trans_other.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_normalization.cpp -o stri_trans_normalization.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_ucnv.cpp -o stri_ucnv.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_uloc.cpp -o stri_uloc.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_utils.cpp -o stri_utils.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H    -fpic -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stri_wrap.cpp -o stri_wrap.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -L/usr/lib/x86_64-linux-gnu -lgsl -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_replace.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/R/lib -lR
installing via 'install.libs.R' to /home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi/libs/stringi.so':
  /home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi/libs/stringi.so: undefined symbol: _ZTIN6icu_558ByteSinkE
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi’
Warning in install.packages :
  installation of package ‘stringi’ had non-zero exit status

还有其他一些诊断要尝试吗? BTW stringi在R3.3中运行良好,但现在我有R3.4。

1 个答案:

答案 0 :(得分:1)

此错误:

Error: package or namespace load failed for ‘stringi’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi/libs/stringi.so':
  /home/ga/R/x86_64-pc-linux-gnu-library/3.4/stringi/libs/stringi.so: undefined symbol: _ZTIN6icu_558ByteSinkE

表示未找到所需的符号。 c++filt通过对符号进行解码来帮助我们:

$ c++filt _ZTIN6icu_558ByteSinkE
typeinfo for icu_55::ByteSink

这可能意味着安装期间stringi使用的ICU库(版本55)不提供此符号。

对于它的价值,使用当前的Ubuntu 16.04,安装工作正常。这是我的配置输出:

checking for local ICUDT_DIR... icu55/data
checking for R_HOME... /usr/lib/R
checking for R... /usr/lib/R/bin/R
checking for R >= 3.1.0 for C++11 use... yes
checking for R < 3.4.0 for CXX1X flag use... no
checking for cat... /bin/cat
checking for gcc... gcc-5
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-5 accepts -g... yes
checking for gcc-5 option to accept ISO C89... none needed
checking how to run the C preprocessor... g++-5 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=c++0x accepts -g... yes
checking whether the C++ compiler supports the long long type... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler supports Standard Template Library... yes
checking whether std::map is available... yes
checking for pkg-config... /usr/bin/pkg-config
checking with pkg-config for the system ICU4C... 55.1
checking for ICU4C >= 52... yes
checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done
checking whether we may build an ICU4C-based project... yes
checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes
checking for available ICU data library (ucnv, uloc, utrans)... yes
checking for available ICU data library (ucol)... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/uconfig_local.h
config.status: creating src/install.libs.R

*** stringi configure summary:
    ICU_FOUND=1
    STRINGI_CXXSTD=CXX_STD=CXX11
    STRINGI_CFLAGS=   -fpic
    STRINGI_CPPFLAGS=-I. -I/usr/include/x86_64-linux-gnu   -UDEBUG -DNDEBUG -DU_HAVE_ELF_H
    STRINGI_CXXFLAGS=   -fpic
    STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu  
    STRINGI_LIBS=-licui18n -licuuc -licudata  

*** compiler settings used:
    CC=gcc-5
    CPP=g++-5 -E
    LD=g++-5
    CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic  
    CPPFLAGS=   -UDEBUG -DNDEBUG
    CXX=g++ -std=c++0x
    CXXFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic  
    LDFLAGS=  
    LIBS=  

我能看到的唯一区别是,就我而言,我正在使用g++ -std=c++0x;你似乎在使用g++ -std=gnu++11。我想知道这可能是原因吗?我也想知道为什么stringi在这里使用g++而非g++-5;如果您设置了不同的默认编译器,那可能就是原因。