我有以下代码:
library(ggplot2)
df <- data.frame(iris) # iris dataset
pca <- prcomp(df[,1:4], retx=T, scale.=T) # scaled pca [exclude species col]
scores <- pca$x[,1:3] # scores for first three PC's
# k-means clustering [assume 3 clusters]
km <- kmeans(scores, centers=3, nstart=5)
ggdata <- data.frame(scores, Cluster=km$cluster, Species=df$Species)
# stat_ellipse is not part of the base ggplot package
source("https://raw.githubusercontent.com/tidyverse/ggplot2/master/R/stat-ellipse.R")
ggplot(ggdata) +
geom_point(aes(x=PC1, y=PC2, color=factor(Species)), size=5, shape=20) +
stat_ellipse(aes(x=PC1,y=PC2,fill=factor(Species)),
geom="polygon", level=0.95, alpha=0.2) +
guides(color=guide_legend("Species"),fill=guide_legend("Cluster"))
产生这个:
如该图所示,我如何删除“群集”图例?
答案 0 :(得分:4)
将fill
指南设为FALSE
ggplot(ggdata) +
geom_point(aes(x=PC1, y=PC2, color=factor(Species)), size=5, shape=20) +
stat_ellipse(aes(x=PC1,y=PC2, fill=factor(Species)),
geom="polygon", level=0.95, alpha=0.2)+
guides(color=guide_legend("Species"), fill = FALSE)