Question

想象一下，我绘制了这个玩具数据：

lev <- c("A", "B", "C", "D")

nodes <- data.frame(ord=c(1,1,1,2,2,3,3,4), brand=
  factor(c("A", "B", "C","B", "C","D", "B","D"), levels=lev), 
  thick=c(16,9,9,16,4,1,4,1))

edge <-  data.frame(ord1=c(1,1,2,3), brand1=factor(c("C","A","B","B"), 
  levels=lev),ord2=c(2,2,3,4), brand2=c("C","B","B","D"),
  N1=c(2,1,2,1), N2=c(5,5,2,1))

ggplot() +
  geom_point(data = nodes,
    aes(x = ord, y = brand, size = sqrt(thick)),
    color = "black", shape = 16, show.legend = T) + 
  scale_x_continuous(limits=c(1, 4), breaks=seq(0,4,1),
    minor_breaks = NULL) + 
  geom_segment(data = edge,
    aes(x = ord1, y = brand1, xend = ord2, yend = brand2), 
    color = "blue", size = edge$N2/edge$N1) +
  ylim(lev) +
  theme_bw()

我按照预期得到了这个情节。

我想添加另一个与节段宽度和N2 / N1相关的图例（节点下方）。

PD：根据你的一些建议......

ggplot() + 
  geom_segment(data = edge,
    aes(x = ord1, y = brand1, xend = ord2, yend = brand2, size = N2/N1), 
    color = "blue", show.legend = T) +
  geom_point(data = nodes,
    aes(x = ord, y = brand, size = thick),
    color = "black", shape = 16, show.legend = T) + 
  scale_x_continuous(limits = c(1, 4), breaks = 0:4,
    minor_breaks = NULL) +
  scale_size_continuous(trans = "sqrt", breaks = c(1,4,9,16))  + 
  ylim(lev) +  theme_bw()

我得到了传说，但它与另一个重叠。

我可以尝试使用颜色而不是宽度：

ggplot()+ geom_segment(data=edge, aes(x=ord1, y=brand1, xend=ord2, yend=brand2, alpha=N2/N1) , size=1 ,show.legend = T) +
  geom_point(data=nodes,aes(x=ord, y=brand, size=thick), color="black", shape=16,show.legend = T) + 
  scale_x_continuous(limits=c(1, 4), breaks=seq(0,4,1), minor_breaks = NULL) + scale_size_continuous(trans = "sqrt", breaks=c(1,4,9,16))  + 
   ylim(lev) + theme_bw()

或改变alpha

虽然我更喜欢宽度的原始方法，因为在我的真实情节中，我会有许多线穿过。

PD：任何具有格子或任何替代方案的解决方案都可以导出为svg或vectorial pdf？

PD2：我发现了另一个问题，瘦点没有正确缩放，有时候不可能强制ggplot显示正确的图例： How can I force ggplot to show more levels on the legend?

Answer 1

使用高度实验包，我把它放在一起：

library(ggplot2) # >= 2.3.0
library(dplyr)
library(relayer) # install.github("clauswilke/relayer")

# make aesthetics aware size scale, also use better scaling
scale_size_c <- function(name = waiver(), breaks = waiver(), labels = waiver(), 
          limits = NULL, range = c(1, 6), trans = "identity", guide = "legend", aesthetics = "size") 
{
  continuous_scale(aesthetics, "area", scales::rescale_pal(range), name = name, 
                   breaks = breaks, labels = labels, limits = limits, trans = trans, 
                   guide = guide)
}


lev <- c("A", "B", "C", "D")

nodes <- data.frame(
  ord = c(1,1,1,2,2,3,3,4),
  brand = factor(c("A", "B", "C", "B", "C", "D", "B", "D"), levels=lev), 
  thick = c(16, 9, 9, 16, 4, 1, 4, 1)
)

edge <- data.frame(
  ord1 = c(1, 1, 2, 3),
  brand1 = factor(c("C", "A", "B", "B"), levels = lev),
  ord2 = c(2, 2, 3, 4),
  brand2 = c("C", "B", "B", "D"),
  N1 = c(2, 1, 2, 1),
  N2 = c(5, 5, 2, 1)
)

ggplot() + 
  (geom_segment(
    data = edge,
    aes(x = ord1, y = brand1, xend = ord2, yend = brand2, edge_size = N2/N1), 
    color = "blue"
  ) %>% rename_geom_aes(new_aes = c("size" = "edge_size"))) +
  (geom_point(
    data = nodes,
    aes(x = ord, y = brand, node_size = thick),
    color = "black", shape = 16
  ) %>% rename_geom_aes(new_aes = c("size" = "node_size"))) + 
  scale_x_continuous(
    limits = c(1, 4),
    breaks = 0:4,
    minor_breaks = NULL
  ) +
  scale_size_c(
    aesthetics = "edge_size",
    breaks = 1:5,
    name = "edge size",
    guide = guide_legend(keywidth = grid::unit(1.2, "cm"))
  )  + 
  scale_size_c(
    aesthetics = "node_size",
    trans = "sqrt",
    breaks = c(1, 4, 9, 16),
    name = "node size"
  )  + 
  ylim(lev) + theme_bw()

由reprex package（v0.2.0）创建于2018-05-16。

Answer 2

有时ggplot可能不是这项工作的最佳工具。为这些实例熟悉一些其他绘图选项是值得的，R的基本图形系统具有相当的通用性。

以下是基本图形中的方法：

lev <- c("A", "B", "C", "D")    
nodes <- data.frame(ord=c(1,1,1,2,2,3,3,4), brand=
    factor(c("A", "B", "C","B", "C","D", "B","D"), levels=lev), 
  thick=c(16,9,9,16,4,1,4,1))   
edge <-  data.frame(ord1=c(1,1,2,3), 
  brand1=factor(c("C","A","B","B"), levels=lev),
  ord2=c(2,2,3,4), 
  brand2=factor(c("C","B","B","D"), levels=lev),
  N1=c(2,1,2,1), N2=c(5,5,2,1))

png(width = 6, height = 4, units = 'in',res=300)
par(xpd=FALSE, mar = c(5, 4, 4, 15) + 0.1)
plot(NULL, NULL,  xaxt = "n", yaxt = "n",
  xlim = c(1,4), ylim = c(1,4), 
  xlab = 'ord', ylab = 'brand')
axis(side = 1, at = 1:4)
axis(side = 2, at = 1:4, labels = LETTERS[1:4])
grid()
par(xpd=TRUE)
segments(edge$ord1, as.integer(edge$brand1), 
  edge$ord2, as.integer(edge$brand2), 
  lwd = 4*edge$N2/edge$N1,
  col='blue')

points(nodes$ord, nodes$brand, cex=sqrt(nodes$thick), pch=16)
legend(4.5,4,
  legend = as.character(c(1,2,4,8,16)), 
  pch = 16, 
  cex = 1.5,
  pt.cex = sqrt(c(1,2,4,8,16)))
legend(6,4,
  legend = as.character(1:5), 
  lwd = 4*(1:5), 
  col = 'blue',
  cex = 1.5)
dev.off()

如何在一个ggplot中有两个不同大小的图例？

2 个答案: