Question

由于某种原因，R包“Boom”无法在我的系统上安装（Ubuntu 14.04）。 R和所有其他软件包都是最新版本（包括'BH'）。由于'Boom'在CRAN上，应该预期软件包将安装没有任何问题（例如Installing package on R, need C++11 support for OSX）。但是，我不知道如何追查原因：我的设置可能与“标准”有什么不同，因此无法安装包？在哪里看？

以下是安装日志的违规部分：

g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I. -I../inst/include -IBmath -Imath/cephes -DNO_BOOST_THREADS -DNO_BOOST_FILESYSTEM -DADD_ -DRLANGUAGE  -I"/home/mbojan/R/library/3.2/BH/include"   -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Models/PosteriorSamplers/DirichletPosteriorSampler.cpp -o Models/PosteriorSamplers/DirichletPosteriorSampler.o
Models/PosteriorSamplers/DirichletPosteriorSampler.cpp: In member function ‘void BOOM::DirichletPosteriorSampler::draw_impl(const std::vector<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl> >&, const BOOM::Vector&)’:
Models/PosteriorSamplers/DirichletPosteriorSampler.cpp:90:65: error: no matching function for call to ‘std::vector<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl> >::erase(__gnu_cxx::__normal_iterator<const std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl>*, std::vector<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl> > >)’
         other_implementations.erase(impl.begin() + which_sampler);
                                                                 ^
Models/PosteriorSamplers/DirichletPosteriorSampler.cpp:90:65: note: candidates are:
In file included from /usr/include/c++/4.8/vector:69:0,
                 from ../inst/include/Models/DataTypes.hpp:24,
                 from ../inst/include/Models/ParamTypes.hpp:22,
                 from ../inst/include/Models/ModelTypes.hpp:22,
                 from ../inst/include/Models/DirichletModel.hpp:22,
                 from ../inst/include/Models/PosteriorSamplers/DirichletPosteriorSampler.hpp:23,
                 from Models/PosteriorSamplers/DirichletPosteriorSampler.cpp:18:
/usr/include/c++/4.8/bits/vector.tcc:134:5: note: std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl>; _Alloc = std::allocator<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl> >; std::vector<_Tp, _Alloc>::iterator = __gnu_cxx::__normal_iterator<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl>*, std::vector<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl> > >; typename std::_Vector_base<_Tp, _Alloc>::pointer = std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl>*]
     vector<_Tp, _Alloc>::
     ^
/usr/include/c++/4.8/bits/vector.tcc:134:5: note:   no known conversion for argument 1 from ‘__gnu_cxx::__normal_iterator<const std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl>*, std::vector<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl> > >’ to ‘std::vector<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl> >::iterator {aka __gnu_cxx::__normal_iterator<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl>*, std::vector<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl> > >}’
/usr/include/c++/4.8/bits/vector.tcc:146:5: note: std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl>; _Alloc = std::allocator<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl> >; std::vector<_Tp, _Alloc>::iterator = __gnu_cxx::__normal_iterator<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl>*, std::vector<std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl> > >; typename std::_Vector_base<_Tp, _Alloc>::pointer = std::shared_ptr<BOOM::DirichletSampler::DirichletSamplerImpl>*]
     vector<_Tp, _Alloc>::
     ^
/usr/include/c++/4.8/bits/vector.tcc:146:5: note:   candidate expects 2 arguments, 1 provided
make: *** [Models/PosteriorSamplers/DirichletPosteriorSampler.o] Error 1
ERROR: compilation failed for package ‘Boom’

Answer 1

尝试更新的编译器：安装g++-4.9并设置

CXX=g++-4.9
CXX1X=g++-4.9

在~/.R/Makevars或您的/etc/R/Makeconf中

。我昨天刚刚在一台机器上重建了Boom（虽然那是Ubuntu 15.04到15.10升级，因为切换到g ++ - 5需要重建）。

R包'Boom'无法在Ubuntu linux上安装

1 个答案: