我目前正在尝试在Ubuntu中安装Circos。
根据说明，我已转到bin文件夹并运行perl circos
我收到一个错误，告诉我没有安装一堆模块。我试图安装它们，除了两个外都有效。
当我进入cpan shell时：
cpan[7]> install GD.pm
Running install for module 'GD'
LDS/GD-2.56.tar.gz
Has already been unwrapped into directory /home/qiime/.cpan/build/GD-2.56-DqDuWT
LDS/GD-2.56.tar.gz
'/usr/bin/perl Build.PL --installdirs site' returned status 512, not re-running
如果我从主终端运行它：
qiime@qiime-190-virtual-box:~/Documents/circos-0.69/bin$ perl -MCPAN -e 'install GD'
Reading '/home/qiime/.cpan/Metadata'
Database was generated on Wed, 27 Jan 2016 07:41:02 GMT
Running install for module 'GD'
Checksum for /home/qiime/.cpan/sources/authors/id/L/LD/LDS/GD-2.56.tar.gz ok
==> Couldn't mkdir '/home/qiime/.cpan/build/tmp-8161': Permission denied
==> Cannot continue: Please find the reason why I cannot make the <==
==> directory <==
==> /home/qiime/.cpan/build/tmp-8161 <==
==> and fix the problem, then retry. <==
每隔一个（总共~15个模块）模块安装没有问题。我不知道此时该做什么。我认为这是我想念的简单事情......？
为了完整性，尝试运行perl circos时出现错误：
qiime@qiime-190-virtual-box:~/Documents/circos-0.69/bin$ perl circos
*** REQUIRED MODULE(S) MISSING OR OUT-OF-DATE ***
You are missing one or more Perl modules, require newer versions, or some modules failed to load. Use CPAN to install it as described in this tutorial
http://www.circos.ca/documentation/tutorials/configuration/perl_and_modules
missing GD
error Can't locate GD.pm in @INC (@INC contains: /home/qiime/Documents/circos-0.69/bin/lib /home/qiime/Documents/circos-0.69/bin/../lib /home/qiime/Documents/circos-0.69/bin /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at (eval 25) line 1.
missing GD::Polyline
error Can't locate GD/Polyline.pm in @INC (@INC contains: /home/qiime/Documents/circos-0.69/bin/lib /home/qiime/Documents/circos-0.69/bin/../lib /home/qiime/Documents/circos-0.69/bin /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at (eval 26) line 1.
编辑：更新
我发现我可能没有安装libgd，所以我这样做了。我尝试在install GD.pm shell中运行cpan：
cpan[1]> install GD.pm
Reading '/home/qiime/.cpan/Metadata'
Database was generated on Wed, 27 Jan 2016 07:41:02 GMT
Running install for module 'GD'
Checksum for /home/qiime/.cpan/sources/authors/id/L/LD/LDS/GD-2.56.tar.gz ok
Scanning cache /home/qiime/.cpan/build for sizes
............................................................................DONE
Configuring L/LD/LDS/GD-2.56.tar.gz with Build.PL
Configuring for libgd version 2.0.36.
Checking for stray libgd header files...none found.
Unknown option: installdirs
Usage: perl Build.PL [options]
Configure GD module.
Options:
-options "JPEG,FT,PNG,GIF,XPM,ANIMGIF" feature options, separated by commas
-lib_gd_path path path to libgd
-lib_ft_path path path to Freetype library
-lib_png_path path path to libpng
-lib_jpeg_path path path to libjpeg
-lib_xpm_path path path to libxpm
-lib_zlib_path path path to libpng
-ignore_missing_gd Ignore missing or old libgd installations and try to compile anyway
If no options are passed on the command line. The program will
attempt to autoconfigure itself with the gdlib-config program (present
in GD versions 2.0.27 or later). Otherwise it will prompt for these
values interactively.
Warning: No success on command[/usr/bin/perl Build.PL --installdirs site]
LDS/GD-2.56.tar.gz
/usr/bin/perl Build.PL --installdirs site -- NOT OK
Failed during this command:
LDS/GD-2.56.tar.gz : writemakefile NO '/usr/bin/perl Build.PL --installdirs site' returned status 512
答案 0 :(得分：3)
正如G. Cito所说，perl中的GD模块存在问题。
我使用他发布的说明以及以下内容来修复错误：
具体来说，最后一点代码是我为了正确安装perl的GD模块所需要的：
srctemp$ curl -O http://www.cpan.org/authors/id/L/LD/LDS/GD-2.49.tar.gz (if curl fails copy and past on your browser)
srctemp$ tar -xzvf GD-2.49.tar.gz
srctemp$ cd GD-2.49
srctemp/GD-2.49$ perl Makefile.PL
srctemp/GD-2.49$ make
srctemp/GD-2.49$ sudo make install
答案 1 :(得分：2)
这不是一个真正的本身，但请看一下：