Galaxy,HTSeq错误 - 未初始化的值

时间:2015-03-04 21:21:40

标签: sequencing

我对RNAseq分析很新。我正在尝试使用Galaxy运行HTSeq,因为我不熟悉编码以及如何使用Python执行此操作。

我收到以下错误:

Use of uninitialized value $input_file in concatenation (.) or string at /mnt/galaxyTools/shed_tools/toolshed.g2.bx.psu.edu/repos/fcaramia/edger/86292c2b0ba9/edger/htseq.pl line 57.

Usage: file [-bchikLlNnprsvz0] [--apple] [--mime-encoding] [--mime-type]
            [-e testname] [-F separator] [-f namefile] [-m magicfiles] file ...
       file -C [-m magicfiles]
       file [--help]

Use of uninitialized value $input_file in concatenation (.) or string at /mnt/galaxyTools/shed_tools/toolshed.g2.bx.psu.edu/repos/fcaramia/edger/86292c2b0ba9/edger/htseq.pl line 62.

后面是一个很长的错误发现位置列表。例如:

Error occured when reading first line of sam file.

Error: 
[Exception type: StopIteration, raised in count.py:81]

Use of uninitialized value $sample in hash element at /mnt/galaxyTools/shed_tools/toolshed.g2.bx.psu.edu/repos/fcaramia/edger/86292c2b0ba9/edger/htseq.pl line 67.

Use of uninitialized value $files[0] in string eq at /mnt/galaxyTools/shed_tools/toolshed.g2.bx.psu.edu/repos/fcaramia/edger/86292c2b0ba9/edger/htseq.pl line 78.

0 个答案:

没有答案