Question

我已经尝试安装DESeq2进行一些分析了几天。 R和biocLite是最新的，我试图运行时遇到权限错误

biocLite("DESeq2")

我收到了大部分好消息，但最后我得到了：

1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘XML’ had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘annotate’ had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘genefilter’ had non-zero exit status
4: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘geneplotter’ had non-zero exit status
5: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ‘DESeq2’ had non-zero exit status
>

我已尝试编辑权限，通过sudo运行R，并将我的用户添加到人员组。

我感到茫然，我还能做些什么来安装它？

由于

Answer 1

从日志中看，问题似乎源自XML包。如果XML库不可用，则libxml2包无法编译。要在Linux上安装它：

sudo apt-get install libxml2 
sudo apt-get install libxml2-dev

然后重新运行安装。

R，biocLite，安装DESeq2时出错

1 个答案: