Question

这就是我所拥有的，但似乎有点多余。也许在Python中更有经验的人知道如何清理它？应该是非常自我解释它的作用。

def complementary_strand(self, strand):
        ''' Takes a DNA strand string and finds its opposite base pair match. '''
        strand = strand.upper()
        newstrand = ""
        for i in range(0, len(strand)):
            if strand[i] == "T":
                newstrand += "A"

            if strand[i] == "A":
                newstrand += "T"

            if strand[i] == "G":
                newstrand += "C"

            if strand[i] == "C":
                newstrand += "G"

        return newstrand

Answer 1

如果字符串足够长，可能是最有效的方法：

import string

def complementary_strand(self, strand):
    return strand.translate(string.maketrans('TAGCtagc', 'ATCGATCG'))

这是使用translate和maketrans方法。您还可以在函数外部移动转换表：

import string
def __init__(self, ...):
    self.trans = string.maketrans('TAGCtagc', 'ATCGATCG')

def complementary_strand(self, strand):
    return strand.translate(self.trans)

Answer 2

更好的是制作发电机，而不是：

TRANS = { "T": "A", "A": "T", "G": "C", "C": "G" }

def complementary_strand(self, strand):
    for base in strand.upper():
        yield TRANS[base]

然后你可以以任何你想要的方式使用它，并且迭代器更有效：

for base in strand.complementary_strand():
    # Do something

Answer 3

像

这样的东西

def complementary_strand(self, strand):
    return strand.upper().translate(maketrans("TAGC", "ATCG"))

Answer 4

def __init__(self, *args):
    # ... original __init__ method, and:
    self.trans = { "T": "A", "A": "T", "G": "C", "C": "G" }

def complementary_strand(self, strand):
    '''Takes a DNA strand string and returns its opposite base pair match.'''
    return ''.join([self.trans[base] for base in strand.upper()])

Answer 5

def compliment(Nucleotide):
    comp = []
    for i in Nucleotide:
        if i == "T":
            comp.append("A")
        if i == "A":
            comp.append("T")
        if i == "G":
            comp.append("C")
        if i == "C":
            comp.append("G")

    return ''.join(comp)

更多pythonic方式找到互补的DNA链

5 个答案: