我有一个像这样的列表:
C
E
我想在下表(表1)中找到这些并将它们写入第二个表(表2)
有没有人有python或perl脚本来执行此操作?
表1:
A MU_ADO_2 1099 MU_ADO_2.1099 o o o o o o o o o o 7.82436 s_3_merged Suseptible A AG 2 4 0 2 0
A MU_ADO_2 1105 MU_ADO_2.1105 327.008 s_2_merged Resistance G GT 81 0 2 132 79 31.5281 s_6_merged Resistance G GT 8 0 1 8 7 34.9813 s_3_merged Suseptible G GT 7 0 0 3 7 7.82436 s_7_merged Suseptible G GT 2 0 0 4 2
A MU_ADO_2 1110 MU_ADO_2.1110 515.963 s_2_merged Resistance A AT 113 96 1 2 110 31.5281 s_6_merged Resistance A AT 7 8 0 0 7 16.3388 s_3_merged Suseptible A AT 4 7 0 0 4 13.808 s_7_merged Suseptible A AT 3 3 0 0 3
A MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
B MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
B MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
B MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
D MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
D MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
D MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
D MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
D MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
D MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
D MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
D MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
D MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
E MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
E MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
E MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
E MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
F MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
F MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
F MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
F MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
F MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
表2:
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
C MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
E MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
E MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
E MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
E MU_ADO_2 1120 MU_ADO_2.1120 1.00E+06 s_2_merged Resistance A AG 169 107 1 167 1 36.1308 s_6_merged Resistance A AG 8 9 0 8 0 35.6751 s_7_merged Suseptible A AG 7 2 0 7 0 20.9415 s_3_merged Suseptible A AG 5 8 0 5 0
答案 0 :(得分:3)
由于您添加了awk标记,我假设您对其他* nix实用程序开放,这里有一个sed
解决方案:
sed '/^[^CE]/d' table1.txt > table2.txt
这将删除table1.txt中不以C或E开头的所有行。
答案 1 :(得分:3)
grep
怎么样?grep -e '^[CE]' source.file
您也可以将其重定向到新文件中:
grep -e '^[CE]' source.file > dest.file
答案 2 :(得分:1)
如果您的问题是:“如果过滤此文件只能查看第一个字段等于C
或E
的条目?”
然后以下内容应该有效:
awk '$1 ~ /[CE]/ { print $0 }' yourfile > outfile
如果您想以牺牲清晰度为代价来保存一些击键,以下内容也适用:
awk '$1 ~ /[CE]/' yourfile > outfile
答案 3 :(得分:1)
替代方案,在python中:
keys = ['C', 'E']
with open('out.txt', 'a') as out:
with open('test.txt') as f:
for line in f:
for key in keys:
if line.startswith(key):
out.write(line)
break
test.txt
是一个包含表格1的文件,复制粘贴
out.txt
是您获取表格2的文件
答案 4 :(得分:0)
假设“C E”列表来自文件:
awk '
FILENAME == ARGV[1] {list[$1]; next}
$1 in list {print}
' list.txt table1 > table2