Question

我无法在Linux桌面上安装glmnet。以下是我跑步时遇到的错误

typedef struct s_obj t_obj;
struct s_obj {
    char *str;
};

int main() {
    char *str; // if disable no segmentation fault fault
    t_obj obj;
    obj.str = strcpy(obj.str, "truc");
    // printf("%lu\n",strlen(obj.str));
    printf("%s\n",obj.str);
    return(0);
}

我首先尝试了R CMD INSTALL -d glmnet_4.0-2.tar.gz，但结果相同。与install.packages("glmnet")一起运行R CMD INSTALL，希望获得一些其他调试信息。

-d

由于某种原因，processing ‘glmnet_4.0-2.tar.gz’ a file * installing to library ‘/home/sconoor/R/x86_64-redhat-linux-gnu-library/3.6’ * build_help_types=html * DBG: 'R CMD INSTALL' now doing do_install() * created lock directory ‘/home/sconoor/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-glmnet’ * installing *source* package ‘glmnet’ ... ** package ‘glmnet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs about to run R CMD SHLIB -o glmnet.so glmnet5dpclean.f glmnet_init.c pb.c wls.f 77 -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules -c glmnet5dpclean.f -o glmnet5dpclean.o make: 77: Command not found make: *** [glmnet5dpclean.o] Error 127 ERROR: compilation failed for package ‘glmnet’ * removing ‘/home/sconoor/R/x86_64-redhat-linux-gnu-library/3.6/glmnet’将R CMD INSTALL替换为我在编译步骤中期望的77。我搜索了其他可能遇到此问题且未发现任何问题的人。我不知道如何解决这个问题。任何建议将不胜感激。

这是R版本信息

gfortran

系统信息：

> sessionInfo()
R version 3.6.0 (2019-04-26)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so

locale:
 [1] LC_CTYPE=en_US.utf8       LC_NUMERIC=C
 [3] LC_TIME=en_US.utf8        LC_COLLATE=en_US.utf8
 [5] LC_MONETARY=en_US.utf8    LC_MESSAGES=en_US.utf8
 [7] LC_PAPER=en_US.utf8       LC_NAME=C
 [9] LC_ADDRESS=C              LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] compiler_3.6.0

和gcc版本

LSB Version:    :core-4.1-amd64:core-4.1-noarch
Distributor ID: CentOS
Description:    CentOS Linux release 7.8.2003 (Core)
Release:        7.8.2003
Codename:       Core

Answer 1

由@BenBolker识别，问题是〜/ .R / Makevars文件中的错误。我记得在编译支持C ++ 14的StanHeaders时从SO答案中复制的代码片段创建了Makevars文件。我错过了fortran编译器路径的make变量定义中的错误。

安装R软件包glmnet时出现编译错误

1 个答案: