Question

我是conda的新手，我对它的工作方式只有非常表面的了解。我的目标是使用conda安装注释软件（该死的）。 Conda的安装如下：

wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh && bash miniconda.sh -b -p $HOME/miniconda 
echo 'export PATH="$HOME/miniconda/bin:$PATH"' >> $HOME/.bashrc

然后我创建了一个环境，设置了频道，并安装了我的软件：

conda create -n dammit python=3 
source activate dammit

conda config --add channels defaults 
conda config --add channels conda-forge 
conda config --add channels bioconda 

conda install dammit

当我尝试运行主脚本时发生错误

Traceback (most recent call last):
  File "./dammit", line 5, in <module>
    from dammit import app
  File "/home/up201505534/miniconda/envs/dammit/lib/python3.6/site-packages/dammit/app.py", line 13, in <module>
    from dammit import annotate
  File "/home/up201505534/miniconda/envs/dammit/lib/python3.6/site-packages/dammit/annotate.py", line 13, in <module>
    from shmlast.app import CRBL
  File "/home/up201505534/miniconda/envs/dammit/lib/python3.6/site-packages/shmlast/app.py", line 3, in <module>
    from doit.tools import run_once, create_folder
  File "/home/up201505534/miniconda/envs/dammit/lib/python3.6/site-packages/doit/__init__.py", line 33, in <module>
    from doit.doit_cmd import get_var
  File "/home/up201505534/miniconda/envs/dammit/lib/python3.6/site-packages/doit/doit_cmd.py", line 14, in <module>
    from .cmd_run import Run
  File "/home/up201505534/miniconda/envs/dammit/lib/python3.6/site-packages/doit/cmd_run.py", line 8, in <module>
    from .runner import Runner, MRunner, MThreadRunner
  File "/home/up201505534/miniconda/envs/dammit/lib/python3.6/site-packages/doit/runner.py", line 8, in <module>
    import cloudpickle
  File "/home/up201505534/miniconda/envs/dammit/lib/python3.6/site-packages/cloudpickle/__init__.py", line 7, in <module>
    from cloudpickle.cloudpickle import *
  File "/home/up201505534/miniconda/envs/dammit/lib/python3.6/site-packages/cloudpickle/cloudpickle.py", line 61, in <module>
    import typing
  File "/opt/lib/python2.7/site-packages/typing.py", line 624, in <module>
    AnyStr = TypeVar('AnyStr', bytes, unicode)

看来问题出在python 2.7库的键入包中。我已经在该死的环境中安装了带有conda的type.py，但是发生了同样的错误。如何解决此问题，并使用“导入命令”在dammit / lib / python lib中进行搜索？

这是sys.path：

['', '/opt/python', '/opt/lib64/python2.7/site-packages', '/opt/lib/python2.7/site-packages', '/opt/lib64/python3.7/site-packages', '/opt/lib/python3.7/site-packages', '/home/up201505534', '/home/up201505534/miniconda/envs/dammit/lib/python36.zip', '/home/up201505534/miniconda/envs/dammit/lib/python3.6', '/home/up201505534/miniconda/envs/dammit/lib/python3.6/lib-dynload', '/home/up201505534/miniconda/envs/dammit/lib/python3.6/site-packages']

和PYTHONPATH：

/opt/python:/opt/lib64/python2.7/site-packages:/opt/lib/python2.7/site-packages:/opt/lib64/python3.7/site-packages:/opt/lib/python3.7/site-packages:

Conda env和python软件包

0 个答案: