Question

我有一个要用于运行某些rstan模型的Linux服务器。我正在使用brms包在R中编写它们。

到目前为止，我已经能够安装软件包而没有任何重大问题。但是当我运行模型时，出现以下错误消息：

Error in compileCode(f, code, language = language, verbose = verbose) : 
  Compilation ERROR, function(s)/method(s) not created! In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:392:0,
                 from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /usr/local/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4,
                 from /usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/core/build_vari_array.hpp:4,
                 from /usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/core.hpp:5,
                 from /usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/mat.hpp:4,
                 from /usr/local/lib/R/site-library/StanHeaders/include/stan/math.hpp:4,
                 from /usr/local/lib/R/site-library/StanHeaders/include/src/stan/model/model_header.hpp:4,
                 from file22814fd3eb3a.cpp:8:
/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ig
In addition: Warning message:
In system(cmd, intern = !verbose) :
  running command '/usr/lib/R/bin/R CMD SHLIB file22814fd3eb3a.cpp 2> file22814fd3eb3a.cpp.err.txt' had status 1
Error in sink(type = "output") : invalid connection

我怀疑某些软件包的安装有问题，但是我不确定该怎么办。

服务器使用的是Ubuntu Server版本18.04 LTS（仿生）64位，并且我具有最新的g ++编译器。规格是记忆体大小：2048MB 磁盘1：20GB

另外，也许不相关，当我安装一些软件包（例如httpuv）时，会收到很多这样的警告：

In file included from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17:0,
                 from /usr/local/lib/R/site-library/BH/include/boost/date_time/gregorian/greg_month.hpp:14,
                 from /usr/local/lib/R/site-library/BH/include/boost/date_time/gregorian/greg_ymd.hpp:16,
                 from /usr/local/lib/R/site-library/BH/include/boost/date_time/gregorian/greg_calendar.hpp:17,
                 from /usr/local/lib/R/site-library/BH/include/boost/date_time/gregorian/gregorian_types.hpp:19,
                 from /usr/local/lib/R/site-library/BH/include/boost/date_time/posix_time/posix_time_config.hpp:18,
                 from /usr/local/lib/R/site-library/BH/include/boost/date_time/posix_time/posix_time_system.hpp:13,
                 from /usr/local/lib/R/site-library/BH/include/boost/date_time/posix_time/ptime.hpp:12,
                 from /usr/local/lib/R/site-library/BH/include/boost/date_time/posix_time/posix_time.hpp:15,
                 from /usr/local/lib/R/site-library/BH/include/boost/date_time/local_time/local_time.hpp:11,
                 from /usr/local/lib/R/site-library/BH/include/boost/date_time.hpp:15,
                 from utils.h:13,
                 from fs.cpp:2:
/usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()

也许相关吗？

有人可以在这里看到问题吗？

在rstan，Ubuntu 18.04中编译错误，该怎么办？

0 个答案: