Question

我已经在本地计算机上为plink2（最新版本）编写了一份conda食谱。当我使用conda build conda_forge在本地构建软件包时，一切正常。但是当我尝试在远程上构建软件包时，它不起作用:(问题-我认为-是我正在运行 * conda 4.7.12-本地osx64 * conda 4.3.34-远程使用linux-64

现在由于速度等原因，我不能只在远程升级conda版本。所以我的问题是如何重新编写包装配方，使其能在conda 4.3.34上构建？

所以我的食谱如下：

plink2
  conda_forge
  meta.yaml

meta.yaml：

{% set version = "0.0.1" %}

package:
  name: "plink2"
  version: "{{ version }}"

source:
  git_url: https://github.com/chrchang/plink-ng.git

build:
  number: 0
  script:
    - cd 2.0
    - make
    - mkdir -p $PREFIX/bin
    - cp bin/plink2 ${PREFIX}/bin/

requirements:
  build:
    - {{ compiler('cxx') }}
  host:
    - openblas # [not osx]
    - zlib
  run:
    - openblas # [not osx]
    - zlib

test:
  commands:
    - plink2 -h | grep "^PLINK"

在远程运行conda build conda_forge时出现以下错误：

No numpy version specified in conda_build_config.yaml.  Falling back to default numpy value of 1.11
WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml.  Falling back to default numpy value of 1.11
Adding in variants from internal_defaults
INFO:conda_build.variants:Adding in variants from internal_defaults
Attempting to finalize metadata for plink2
INFO:conda_build.metadata:Attempting to finalize metadata for plink2
Traceback (most recent call last):
  File "/local/genome/packages/anaconda3/latest/bin/conda-build", line 11, in <module>
    sys.exit(main())
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/cli/main_build.py", line 456, in main
    execute(sys.argv[1:])
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/cli/main_build.py", line 447, in execute
    verify=args.verify, variants=args.variants)
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/api.py", line 208, in build
    notest=notest, need_source_download=need_source_download, variants=variants)
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/build.py", line 2314, in build_tree
    notest=notest,
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/build.py", line 1324, in build
    output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/render.py", line 735, in expand_outputs
    for (output_dict, m) in _m.copy().get_output_metadata_set(permit_unsatisfiable_variants=False):
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/metadata.py", line 2038, in get_output_metadata_set
    bypass_env_check=bypass_env_check)
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/metadata.py", line 721, in finalize_outputs_pass
    permit_unsatisfiable_variants=permit_unsatisfiable_variants)
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/render.py", line 509, in finalize_metadata
    exclude_pattern)
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/render.py", line 371, in add_upstream_pins
    permit_unsatisfiable_variants, exclude_pattern)
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/render.py", line 359, in _read_upstream_pin_files
    permit_unsatisfiable_variants=permit_unsatisfiable_variants)
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/render.py", line 143, in get_env_dependencies
    channel_urls=tuple(m.config.channel_urls))
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/environ.py", line 738, in get_install_actions
    locking=locking, timeout=timeout)
  File "/local/genome/packages/anaconda3/latest/lib/python3.6/site-packages/conda_build/index.py", line 258, in get_build_index
    if channel.scheme == "file":
AttributeError: 'str' object has no attribute 'scheme'

非常感谢，F

我如何降级conda包装配方？

0 个答案: