Augustus 3.3.2的安装问题

Question

  

mkdir -p bin cd src && make make [1]：进入目录   /home/dcb/Documents/sof/augustus-3.3.2/src' echo "-Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 " > cxxflags make[1]: Leaving directory / home / dcb / Documents / sof / augustus-3.3.2 / src'cd auxprogs && make   make [1]：进入目录   /home/dcb/Documents/sof/augustus-3.3.2/auxprogs' cd bam2hints; make; make[2]: Entering directory / home / dcb / Documents / sof / augustus-3.3.2 / auxprogs / bam2hints'g ++ -Wall   -O2 -o bam2hints bam2hints.o -lbamtools -lz / usr / bin / ld：/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti .o：   .init' /usr/bin/ld: final link failed: Bad value collect2: error: ld returned 1 exit status make[2]: *** [bam2hints] Error 1 make[2]: Leaving directory / home / dcb / Documents / sof / augustus-3.3.2 / auxprogs / bam2hints的make [1]部分中无法识别的重定位（0x2a）：    * [all]错误2 make [1]：离开目录`/home/dcb/Documents/sof/augustus-3.3.2/auxprogs'make：* [all]   错误2

Answer 1

通过Conda安装可能会有所帮助

• 下载miniconda

wget https://repo.anaconda.com/miniconda/Miniconda2-latest-Linux-x86_64.sh
bash Miniconda2-latest-Linux-x86_64.sh

• 安装奥古斯都

conda install -c bioconda augustus