我想使用Windows版Docker在我的公司网络上托管Shiny应用程序。
如何设置Docker,odbc.ini,odbcinst.ini,freetds.conf或其他可能的文件,以便Shiny应用程序可以从内部Microsoft SQL Server(2016)数据库查询数据?数据库服务器不在运行Docker容器的同一台计算机上运行。
我不知道我是否需要更新版本的FreeTDS或是否错误配置了其中一个文件。我尝试在所有文件中使用服务器的IP地址而不是sql-server.host.com
,但在下面得到了相同的错误消息。
$ tsql -C
输出:
Compile-time settings (established with the "configure" script)
Version: freetds v1.00.104
freetds.conf directory: /etc/freetds
MS db-lib source compatibility: no
Sybase binary compatibility: yes
Thread safety: yes
iconv library: yes
TDS version: 4.2
iODBC: no
unixodbc: yes
SSPI "trusted" logins: no
Kerberos: yes
OpenSSL: no
GnuTLS: yes
MARS: no
$ odbcinst -j
输出:
unixODBC 2.3.6
DRIVERS............: /etc/odbcinst.ini
SYSTEM DATA SOURCES: /etc/odbc.ini
FILE DATA SOURCES..: /etc/ODBCDataSources
USER DATA SOURCES..: /root/.odbc.ini
SQLULEN Size.......: 8
SQLLEN Size........: 8
SQLSETPOSIROW Size.: 8
$ cat etc/odbcinst.ini
输出:
[FreeTDS]
Description = FreeTDS unixODBC Driver
Driver = /usr/lib/x86_64-linux-gnu/odbc/libtdsodbc.so
$ cat etc/odbc.ini
输出:
[sql-server]
driver = FreeTDS
server = sql-server.host.com
port = 1433
TDS_Version = 4.2
$ cat etc/freetds/freetds.conf
输出:
[sql-server]
host = sql-server.host.com
port = 1433
tds version = 4.2
R中的命令给出错误:
con <- dbConnect(odbc::odbc(),
driver = "FreeTDS",
server = "sql-server.host.com",
port = 1433,
database = "database name",
TDS_Version = 4.2)
错误:
Error: nanodbc/nanodbc.cpp:950: 08001: [FreeTDS][SQL Server]Unable to connect to data source
Execution halted
Docker文件:
# Install R version 3.5.3
FROM r-base:3.5.3
# Install Ubuntu packages
RUN apt-get update && apt-get install -y \
sudo \
gdebi-core \
pandoc \
pandoc-citeproc \
libcurl4-gnutls-dev \
libcairo2-dev/unstable \
libxt-dev \
libssl-dev \
unixodbc unixodbc-dev \
freetds-bin freetds-dev tdsodbc
# Edit odbc.ini, odbcinst.ini, and freetds.conf files
RUN echo "[sql-server]\n\
host = sql-server.host.com\n\
port = 1433\n\
tds version = 4.2" >> /etc/freetds.conf
RUN echo "[FreeTDS]\n\
Description = FreeTDS unixODBC Driver\n\
Driver = /usr/lib/x86_64-linux-gnu/odbc/libtdsodbc.so" >> /etc/odbcinst.ini
RUN echo "[sql-server]\n\
driver = FreeTDS\n\
server = sql-server.host.com\n\
port = 1433\n\
TDS_Version = 4.2" >> /etc/odbc.ini
# Install R packages that are required
RUN R -e "install.packages(c('shiny', 'DBI', 'odbc'), repos='http://cran.rstudio.com/')"
# copy the app to the image
RUN mkdir /root/shiny_example
COPY app /root/shiny_example
COPY Rprofile.site /usr/lib/R/etc/
# Make the ShinyApp available at port 801
EXPOSE 801
CMD ["R", "-e", "shiny::runApp('/root/shiny_example')"]
Docker构建并运行命令:
docker build . -t shiny_example
docker run -it --network=host -p 801:801 shiny_example
请注意,以下R代码可在运行Docker容器的Windows计算机上运行,并且我可以成功查询数据库:
library(DBI)
con <- dbConnect(odbc::odbc(),
driver = "SQL server",
server = "sql-server.host.com")
$ isql -v sql-server
输出:
[S1000][unixODBC][FreeTDS][SQL Server]Unable to connect to data source
[01000][unixODBC][FreeTDS][SQL Server]Unknown host machine name.
[ISQL]ERROR: Could not SQLConnect
$ tsql -S sql-server
输出:
locale is "en_US.UTF-8"
locale charset is "UTF-8"
using default charset "UTF-8"
Error 20013 (severity 2):
Unknown host machine name.
There was a problem connecting to the server
很明显,我不知道自己在做什么。非常感谢您对此提供任何帮助。
答案 0 :(得分:0)
您似乎是对的,但可能略有遗漏。我有类似的问题,但是我能够解决它!
在python
+ mssqlserver
+ pymssql
+ docker(unbuntu16.04 base image)
上
在不结束结尾的情况下,运行我的代码(使用pymssql)为giving me this error
Traceback (most recent call last):
File "<stdin>", line 4, in <module>
File "src/pymssql.pyx", line 645, in pymssql.connect
pymssql.InterfaceError: Connection to the database failed for an unknown reason.
我followed创建了3个文件并复制到了图像中!
myserver.orgName.com
。
docker / odbcinst.ini [FreeTDS]
Description = v0.91 with protocol v7.3
Driver = /usr/lib/x86_64-linux-gnu/odbc/libtdsodbc.so
docker / odbc.ini
[myserverdsn]
Driver = FreeTDS
Server = myserver.orgName.com
Port = 1433
TDS_Version = 7.3
docker / freetds.conf
[global]
# TDS protocol version, use:
# 7.3 for SQL Server 2008 or greater (tested through 2014)
# 7.2 for SQL Server 2005
# 7.1 for SQL Server 2000
# 7.0 for SQL Server 7
tds version = 7.2
port = 1433
# Whether to write a TDSDUMP file for diagnostic purposes
# (setting this to /tmp is insecure on a multi-user system)
; dump file = /tmp/freetds.log
; debug flags = 0xffff
# Command and connection timeouts
; timeout = 10
; connect timeout = 10
# If you get out-of-memory errors, it may mean that your client
# is trying to allocate a huge buffer for a TEXT field.
# Try setting 'text size' to a more reasonable limit
text size = 64512
# A typical Microsoft server
[myserverdsn]
host = myserver.orgName.com
port = 1433
tds version = 7.3
Dockerfile内容
RUN apt-get -y install unixodbc unixodbc-dev freetds-dev freetds-bin tdsodbc
COPY freetds.conf /etc/freetds/freetds.conf
COPY odbc.ini /etc/odbc.ini
COPY odbcinst.ini /etc/odbcinst.ini
测试有效的python代码:
python
>>> import pymssql
>>> conn = pymssql.connect(server = 'myserver.orgName.com',
user = 'myusername',
password = 'mypassword',
database= 'mydbname')
没有错误!