Question

我正在尝试在一行中安装许多软件包：

biolcite_packages <- c("Biobase", "biomaRt", "edgeR", "limma", "rhdf5", "scater",
                       "destiny", "monocle", "org.Hs.eg.db", "org.Mm.eg.db", "org.Rn.eg.db",
                       "GEOquery", "Biobase", "tximport", "EnsDb.Hsapiens.v86",
                       "EnsDb.Rnorvegicus.v79", "EnsDb.Mmusculus.v79", "AnnotationDbi")
BiocManager::install(c(biolcite_packages), dependencies = TRUE, ask = FALSE, 
                     type = "both", INSTALL_opts = options(install.packages.check.source = "no"))

一段时间后，我收到以下控制台问题：

  There are binary versions available but the source versions are later:
        binary  source needs_compilation
plotly   4.7.1   4.9.0             FALSE
umap   0.1.0.3 0.2.0.0              TRUE

Do you want to install from sources the package which needs compilation? (Yes/no/cancel)

我尝试将类型更改为二进制，我添加了INSTALL_opts，ask = FALSE，似乎没有什么不同。有没有办法使响应自动化，以便脚本可以自动化？另外，有没有办法不为已安装的软件包下载数据？

使用BiocManager :: install安装时没有控制台响应

0 个答案: