我需要对43个变量重复一个函数。更具体地说,我正在对数据进行非参数重复测量测试。这将产生两个最终数据集-一个数据集包含每个变量的整体测试统计信息,第二个数据集包含每对时间的特定测试以显示差异在哪里。
我已经创建了用于循环和该函数的变量列表,但是不确定如何使该函数在所有变量上运行。
我将非常感谢您对以下方面的帮助: 1.在每个变量上运行我的函数 2.将每个变量的结果组合成两个数据帧(代码中突出显示的一个用于整体测试,第二个用于特定的时差)。
非常感谢!
这是我的数据:
> dput(junk)
structure(list(Patient = c("TLA001", "TLA001", "TLA001", "TLA001",
"TLA001", "TLA001", "TLA002", "TLA002", "TLA002", "TLA002", "TLA002",
"TLA003", "TLA003", "TLA003", "TLA003", "TLA003", "TLA003", "TLA004",
"TLA004", "TLA004", "TLA004", "TLA004", "TLA004", "TLA005", "TLA005",
"TLA005", "TLA005", "TLA005", "TLA005", "TLA006", "TLA006", "TLA006",
"TLA006", "TLA006", "TLA006", "TLA006", "TLA008", "TLA008", "TLA008",
"TLA008", "TLA008", "TLA008", "TLA009", "TLA009", "TLA009", "TLA009",
"TLA009", "TLA009", "TLA010", "TLA010", "TLA010", "TLA010", "TLA010",
"TLA010", "TLA011", "TLA011", "TLA011", "TLA011", "TLA011", "TLA011",
"TLA012", "TLA012", "TLA012", "TLA012", "TLA012", "TLA012", "TLA012",
"TLA013", "TLA013", "TLA013", "TLA013", "TLA013", "TLA013", "TLA013",
"TLA014", "TLA014", "TLA014", "TLA014", "TLA015", "TLA015", "TLA015",
"TLA015", "TLA015", "TLA015"), Night = c("TLA -3", "TLA -2",
"TLA -1", "TLA 1", "TLA 2", "TLA 3", "TLA -3", "TLA -2", "TLA -1",
"TLA 1", "TLA 2", "TLA -3", "TLA -2", "TLA -1", "TLA 1", "TLA 2",
"TLA 3", "TLA -3", "TLA -2", "TLA -1", "TLA 1", "TLA 2", "TLA 3",
"TLA -3", "TLA -2", "TLA -1", "TLA 1", "TLA 2", "TLA 3", "TLA -3",
"TLA -2", "TLA -1", "TLA 1", "TLA 2", "TLA 3", "TLA 4", "TLA -3",
"TLA -2", "TLA -1", "TLA 1", "TLA 2", "TLA 3", "TLA -3", "TLA -2",
"TLA -1", "TLA 1", "TLA 2", "TLA 3", "TLA -3", "TLA -2", "TLA -1",
"TLA 1", "TLA 2", "TLA 3", "TLA -3", "TLA -2", "TLA -1", "TLA 1",
"TLA 2", "TLA 3", "TLA -3", "TLA -2", "TLA -1", "TLA 1", "TLA 2",
"TLA 3", "TLA 4", "TLA -3", "TLA -2", "TLA -1", "TLA 1", "TLA 2",
"TLA 3", "TLA 4", "TLA -3", "TLA -2", "TLA -1", "TLA 1", "TLA -3",
"TLA -2", "TLA -1", "TLA 1", "TLA 2", "TLA 3"), var = c(0.1,
0, 0, 0, 0, 0, 0.5, 0, 0, 2.8, 0.2, 0.3, 0, 0.4, 0.3, 0, 2.2,
1.1, 0.6, 2.1, 1.4, 1.7, 0.9, 0.3, 0.3, 0, 1, 0, 0.3, 0, 0, 0,
0, 0, 0, 0, 0.1, 0.2, 0.1, 0.1, 0.4, 0, 0.4, 0.1, 0, 0, 0, 0,
1.1, 0.8, 0, 0, 0.6, 0, 0, 0, 0, 0, 0, 0, 2, 0.9, 0.2, 0.4, 0.3,
1, 0.9, 0, 0, 0, 0.3, 0.3, 0, 0, 1.2, 0.9, 0.6, 0.7, 0.7, 0,
0, 0, 0, 0), SF_Cluster = c("Responder", "Responder", "Responder",
"Responder", "Responder", "Responder", "Non-responder", "Non-responder",
"Non-responder", "Non-responder", "Non-responder", "Responder",
"Responder", "Responder", "Responder", "Responder", "Responder",
"Responder", "Responder", "Responder", "Responder", "Responder",
"Responder", "Responder", "Responder", "Responder", "Responder",
"Responder", "Responder", "Non-responder", "Non-responder", "Non-responder",
"Non-responder", "Non-responder", "Non-responder", "Non-responder",
"Responder", "Responder", "Responder", "Responder", "Responder",
"Responder", "Non-responder", "Non-responder", "Non-responder",
"Non-responder", "Non-responder", "Non-responder", "Responder",
"Responder", "Responder", "Responder", "Responder", "Responder",
"Responder", "Responder", "Responder", "Responder", "Responder",
"Responder", "Non-responder", "Non-responder", "Non-responder",
"Non-responder", "Non-responder", "Non-responder", "Non-responder",
"Responder", "Responder", "Responder", "Responder", "Responder",
"Responder", "Responder", "Non-responder", "Non-responder", "Non-responder",
"Non-responder", "Responder", "Responder", "Responder", "Responder",
"Responder", "Responder")), row.names = c(NA, -84L), class = c("tbl_df",
"tbl", "data.frame"), spec = structure(list(cols = list(Patient = structure(list(), class = c("collector_character",
"collector")), Night = structure(list(), class = c("collector_character",
"collector")), var = structure(list(), class = c("collector_double",
"collector")), SF_Cluster = structure(list(), class = c("collector_character",
"collector"))), default = structure(list(), class = c("collector_guess",
"collector"))), class = "col_spec"))
这是我的代码:
names(junk)
varlist=names(junk)[5:9]
library("nparLD")
nonparLD=function(var, data=junk) {
boxplot(var ~ Night, data = data, lwd = 2, xlab = "time", ylab="N",
font.lab = 2, cex.lab = 2, main = "Box Plots: var ")
ex.f1np <- nparLD(var ~ T, data = data, subject = "id",
description = FALSE)
plot(ex.f1np,main = "Relative Effects: var " )
summary(ex.f1np)
#Data frame 1: Overall test result
r_var=rbind(ex.f1np$ANOVA.test,ex.f1np$Wald.test )
rownames(r_var)=c("varAT","var_WT")
#Data frame 2: which time differences are significant?
m1_2 <- which(((data$T == 1) + (data$T == 2)) == 1)
m1_3 <- which(((data$T == 1) + (data$T == 3)) == 1)
m1_4<- which(((data$T == 1) + (data$T == 4)) == 1)
m1_5<- which(((data$T == 1) + (data$T == 5)) == 1)
m1_6<- which(((data$T == 1) + (data$T == 6)) == 1)
ex.f1np1_2 <- nparLD(var ~ T, data = data[m1_2,], subject = "id",
description = FALSE)
ex.f1np1_3 <- nparLD(var ~ T, data = data[m1_3,], subject = "id",
description = FALSE)
ex.f1np1_4 <- nparLD(var ~ T, data = data[m1_4,], subject = "id",
description = FALSE)
ex.f1np1_5 <- nparLD(var ~ T, data = data[m1_5,], subject = "id",
description = FALSE)
ex.f1np1_2 <- nparLD(var ~ T, data = data[m1_2,], subject = "id",
description = FALSE)
ex.f1np1_6 <- nparLD(var ~ T, data = data[m1_6,], subject = "id",
description = FALSE)
summary(ex.f1np1_2)
summary(ex.f1np1_3)
summary(ex.f1np1_4)
summary(ex.f1np1_5)
summary(ex.f1np1_6)
#Data set for test stats
r_varT=rbind(ex.f1np1_2$ANOVA.test,ex.f1np1_2$Wald.test,
ex.f1np1_3$ANOVA.test,ex.f1np1_3$Wald.test,
ex.f1np1_4$ANOVA.test,ex.f1np1_4$Wald.test,
ex.f1np1_5$ANOVA.test,ex.f1np1_5$Wald.test,
ex.f1np1_6$ANOVA.test,ex.f1np1_6$Wald.test)
#Data set for time differences for each var
r_varT=t(r_varT)
colnames(r_varT)=c("AT12","WT12","AT13","WT13","AT14","WT14","AT15","WT15","AT16","WT16" )
rownames(r_varT)=c("varS", "varDF","varP")
}