Question

我正在尝试使用以下Dockerfile构建一个Docker容器：

FROM fedora:29

RUN dnf -y update && dnf install -y file gcc gcc-c++ git make wget which libtool python3-pip redhat-rpm-config python3-devel zlib-devel libstdc++ openmpi-devel

RUN cd /tmp && \
wget http://www.mpich.org/static/downloads/3.3/mpich-3.3.tar.gz && \
gzip -dc mpich-3.3.tar.gz | tar xf - && \
cd mpich-3.3 && \
./configure --disable-fortran --prefix=/usr/mpich-3.3 && \
make && \
make install

ENV PATH            /usr/mpich-3.3/bin:${PATH}
ENV LD_LIBRARY_PATH /usr/mpich-3.3/lib:${LD_LIBRARY_PATH}

RUN cd /usr && git clone https://github.com/Dowell-Lab/FStitch
RUN              cd /usr/FStitch/src && make clean && make
RUN pip3 install FStitch-Bidir --user
ENV PATH            /usr/FStitch/src:${PATH}
ENV PATH            /root/.local/bin:${PATH}

RUN cd /usr && git clone https://github.com/Dowell-Lab/Tfit
RUN              cd /usr/Tfit/src && make clean && make 
ENV PATH            /usr/Tfit/src:${PATH}

CMD /bin/bash

我要克隆的项目是用c ++ 11编写的，两个项目中的第二个（Tfit）需要openmpi / mpich。第一个程序编译成功，但是第二个程序在编译器的最后一步出现以下错误：

/usr/bin/ld: cannot find -lstdc++
collect2: error: ld returned 1 exit status
make: *** [Makefile:20: NU_FIT] Error 1

我搜索并找到了这两个链接：

cpp: usr/bin/ld: cannot find -l<nameOfTheLibrary>

usr/bin/ld: cannot find -l<nameOfTheLibrary>

但是这些都不能解决这个问题，因为我想我只是缺少对库的依赖/符号链接，但是我不确定如何在构建中实现这一点。我可以在本地成功编译，但是我必须对模块加载mpi / openmpi-x86_64才能这样做。我的猜测是设置LD_LIBRARY_PATH时这是一个openmpi问题，但不确定如何在Docker构建中解决此问题。

Makefile的前几行如下：

CXX             = mpic++
CXXFLAGS        = -static-libstdc++ -static-libgcc  -Wno-unused-variable -Wno-non-virtual-dtor -std=c++11 -fopenmp -Wno-write-strings -Wno-literal-suffix -D_GLIBCXX_USE_CXX11_ABI=0 -g
EXEC            = ${PWD}/Tfit
ARCH                     = getconf LONG_BIT

CPP_FLAGS_32    = -D32_BIT
CPP_FLAGS_64    = -D64_BIT

GCCVERSION      = $(shell ${CXX} -dumpversion)
NU_FIT: main.o load.o split.o model.o across_segments.o template_matching.o \
    read_in_parameters.o model_selection.o error_stdo_logging.o \
    MPI_comm.o  density_profiler.o bootstrap.o prelim_main.o model_main.o select_main.o FDR.o BIC.o ParamWrapper.o old_template_matching.o
    @printf "linking               : "
    @${CXX} ${CXXFLAGS}  ${PWD}/main.o ${PWD}/load.o ${PWD}/model_selection.o \
    ${PWD}/split.o ${PWD}/model.o ${PWD}/across_segments.o  \
    ${PWD}/template_matching.o ${PWD}/read_in_parameters.o  \
    ${PWD}/MPI_comm.o   \
    ${PWD}/bootstrap.o ${PWD}/density_profiler.o \
    ${PWD}/prelim_main.o ${PWD}/model_main.o ${PWD}/BIC.o ${PWD}/FDR.o  \
    ${PWD}/select_main.o  ${PWD}/error_stdo_logging.o ${PWD}/ParamWrapper.o ${PWD}/old_template_matching.o -o ${EXEC} -lmpi
    @cp ${PWD}/Tfit ${PWD}/EMGU

感谢您的帮助！

Answer 1

尝试将libstdc++-static添加到您的dnf install列表中。（https://github.com/numenta/nupic/issues/1901）

docker build error / usr / bin / ld：找不到-lstdc ++ fedora29

1 个答案: