QuasR示例无法运行

时间:2019-01-01 11:17:32

标签: r bioconductor

在R Bioconductor的QuasR包装中,据报道:

  

get(名称,envir = asNamespace(pkg),继承= FALSE)中的错误:     运行“ example(qCount)”时找不到对象“ finalize_filexp”。

当我将“ XVector”和“ GenomicAlignments”更新为最新版本后,出现了此问题。我该如何解决这个问题?

'XVector'版本为0.20,'GenomicAlignments'版本为0.16时运行良好

> example(qCount)

qCount> library(GenomicRanges)

qCount> library(Biostrings)

qCount> library(Rsamtools)

qCount> # copy example data to current working directory
qCount> file.copy(system.file(package="QuasR", "extdata"), ".",       recursive=TRUE)
[1] TRUE

qCount> # load genome sequence
qCount> genomeFile <- "extdata/hg19sub.fa"

qCount> gseq <- readDNAStringSet(genomeFile)

Error in get(name, envir = asNamespace(pkg), inherits = FALSE) : 
object 'finalize_filexp' not found

1 个答案:

答案 0 :(得分:0)

此问题已通过更新Biostrings和Rsamtools解决。