我之所以这样发布,是因为我没有设法将解决方案发布到其他地方。我正在尝试重新部署闪亮的破折号,但是在部署时无法安装软件包。
这是BioConductor错误,但它声称失败的程序包是CRAN程序包,所以我不知道该怎么做。
MRE:
library(ggseg); library(shiny); library(tidyverse); library(plotly)
# Define UI ----
ui <- fluidPage(
# Application title
titlePanel("Demonstration of ggseg package"),
# Sidebar with a slider input for number of bins
sidebarLayout(
sidebarPanel(
radioButtons(inputId = "atlasChoice", label="Choose atlas",
choiceValues = c("dkt_3d","yeo7_3d",),
choiceNames = c("DKT", "Yeo7"),
inline = FALSE, width = NULL),
radioButtons(inputId = "positionChoice", label="Choose position",
choices = c("LCBC left","LCBC right"),
inline = FALSE, width = NULL)
),
# Show a plot of the generated distribution
mainPanel(
uiOutput("plotUI")
)
)
)
# Define server ----
server <- function(input, output) {
output$plotUI <- renderUI({
plotlyOutput("plotlyPlot")
})
output$plotlyPlot <- renderPlotly({
cc = strsplit(input$positionChoice, " ")[[1]]
ggseg3d(atlas=input$atlasChoice,
surface=cc[1],
hemisphere=cc[2]
)
})
}
# Run the application
shinyApp(ui = ui, server = server)
我的存储库设置为:
getOption("repos")
BioCsoft
"https://bioconductor.org/packages/3.7/bioc"
BioCann
"https://bioconductor.org/packages/3.7/data/annotation"
BioCexp
"https://bioconductor.org/packages/3.7/data/experiment"
BioCworkflows
"https://bioconductor.org/packages/3.7/workflows"
CRAN
"https://cran.rstudio.com"
错误如下:
Preparing to deploy document...DONE
Uploading bundle for document: 619289...DONE
Deploying bundle: 1770029 for document: 619289 ...
Waiting for task: 573690766
building: Parsing manifest
################################ Begin Task Log ################################
################################# End Task Log #################################
Error: Unhandled Exception: Child Task 573690767 failed:
Error parsing manifest: Unable to determine package source for Bioconductor package oompaBase: Repository must be specified
Execution halted
答案 0 :(得分:1)
我不知道Athanasia最终是否解决了这个问题,但是今天我遇到了类似的问题,所以这对我有用,以防其他人有用:)
我的应用程序使用biomaRt,我认为这取决于Biobase。尝试部署时,出现错误:
identityHashCode
我根据发现的here的说明更改了回购设置。单是这也不适合我。
使用Error: Unhandled Exception: Child Task 601909864 failed: Error parsing manifest: Unable to
determine package source for Bioconductor package Biobase: Repository must be specified
重新安装Biomart之后,我的应用程序便成功部署了:)