我正在使用Ubuntu18.04,正在运行的程序是从https://sourceforge.net/projects/sb2nhri/files/MyCC/下载的MyCC。
MyCC.py有一些选项,例如:
-a A file having coverage information.
-t Minimum contig length. [defaults: 1000 bp]
-lt A fraction of contigs for the first-stage clustering. [default: 0.7]
-ct Minimum contig lengh for first stage clustering. [bp]
-meta Change to meta mode of Prodigal. [default: single]
-p Perplexity for BH-SNE. [default: 20, range between 5 and 50]
-pm To set preferences all equal to the median of the other similarities for affinity propagation.
-st Maximum distance for sparse format of affinity propagation. [default: 500]
-mask To mask repetitive sequences.
-keep To keep temporary files.
但是没有任何选择来控制线程数。如何验证使用的线程数?谢谢。