Question

我尝试使用snakemake的实用程序下载一些数据（snakemake 5.2.1）：

rule down_data2:
    input:

        HTTP.remote("https://sourceforge.net/projects/fusioncatcher/files/data/human_v90.tar.gz.ac", keep_local=True,allow_redirects=True),

    output:
        "
        "human_v90.tar.gz.ac",

    run:
        outputName = os.path.basename(input[0])
        shell("mv {input} {outputName}")

我在mv comand上有问题。似乎它们保存在另一个目录中。

Answer 1

URL shouldn't include protocol https。

import os
from snakemake.remote.HTTP import RemoteProvider as HTTPRemoteProvider

HTTP = HTTPRemoteProvider()

rule down_data2:
    input:
        HTTP.remote("https://sourceforge.net/projects/fusioncatcher/files/data/human_v90.tar.gz.ac", keep_local=True,allow_redirects=True),
    output:
        "human_v90.tar.gz.ac"
    run:
        outputName = os.path.basename(input[0])
        shell("mv {input} {outputName}")

snakemake从sourceforce下载文件

1 个答案: