原始的WinBUGS代码如下:
model { for (i in 1:n) {for (j in 1:J) {y[i,j] <- equals(D[i],j)
D[i] ~ dcat(p[i,])
p[i,j] <- phi[i,j] / sum(phi[i,])
LL[i,j] <- y[i,j]*log(p[i,j])}
for (j in 2:J) {
S.ed[i,j] <- c1[j]*ed.c[i]+equals(degree,2)*c2[j]*ed.c[i]*ed.c[i]+inprod(delta.c[j,],Spline[i,])
log(phi[i,j]) <- beta0[j] + beta1[j]*white[i] + beta2[j]*exp.c[i] + S.ed[i,j]}
LLt[i] <- sum(LL[i,])
phi[i,1] <- 1
H[i] <- 1/exp(LLt[i])
exp.c[i] <- exp[i]-mean(exp[])
ed.c[i] <- ed[i]-mean(ed[])}
# Priors
beta0[1] <- 0; beta1[1] <- 0; beta2[1] <- 0; c1[1] <- 0; c2[1] <- 0
for (j in 2:J) {beta1[j] ~ dnorm(0,0.0001)
beta2[j] ~ dnorm(0,0.0001)
c1[j] ~ dnorm(0,0.0001)
c2[j] ~ dnorm(0,0.0001)
beta0[j] ~ dnorm(0,0.0001)}
Dv <- -2*sum(LLt[])
for (k in 1:K) {knot.c[k] <- knot[k]-mean(ed[])
# degree =1 for linear spline, =2 for quadratic spline
for (i in 1:337) { S[i,k] <- (ed.c[i]-knot.c[k])*step(ed[i]-knot[k])
Spline[i,k] <- pow(S[i,k],degree)}}
# Random spline coefficients
for (j in 2:J) {for (k in 1:K) {delta[j,k] ~ dnorm(0,tau[j]); delta.c[j,k] <- delta[j,k]-mean(delta[j,])}
# full conditionals for spline precision
tau[j] ~ dgamma(As[j],Bs[j]); As[j] <- 0.1 + K/2; Bs[j] <- 0.1 + inprod(delta.c[j,],delta.c[j,])/2}}
*INITIS*
list(beta1=c(NA,0,0,0,0),beta2=c(NA,0,0,0,0),c1=c(NA,0,0,0,0),
c2=c(NA,0,0,0,0),tau=c(NA,1,1,1,1),
beta0=c(NA,0,0,0,0),delta=structure(.Data=c(NA,NA,NA,NA,NA,NA,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0),.Dim=c(5,6)))
list(beta1=c(NA,-0.5,0.5,0,0),beta2=c(NA,-0.5,0.5,0,0),
c1=c(NA,-0.5,0.5,0,0),c2=c(NA,-0.5,0.5,0,0),tau=c(NA,1,1,1,1),
beta0=c(NA,-0.5,0.5,0,0),delta=structure(.Data=c(NA,NA,NA,NA,NA,NA,
-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,
0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,0,0),.Dim=c(5,6)))
*DATA*
我自己的R2WinBUGS代码是这样的。
rm(list=ls())
setwd("C:/Users/~~/BMCD")
Data <- read.table("model604data.txt")
D<-Data[,1]; exp<-Data[,2]; ed<-Data[,3]; white<-Data[,4]; J=5; K=6; n=337; knot=c(9.6,12,13.6,14,16,16.4); degree=2;
data <- list(D=D, exp=exp, ed=ed, white=white, J=J, K=K, n=n, knot=knot, degree=degree)
parameters <- c("beta0","beta1","beta2")
inits =list(list(beta1=c(NA,0,0,0,0),beta2=c(NA,0,0,0,0),c1=c(NA,0,0,0,0),c2=c(NA,0,0,0,0),tau=c(NA,1,1,1,1),beta0=c(NA,0,0,0,0),delta=structure(.Data=c(NA,NA,NA,NA,NA,NA,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0),.Dim=c(5,6))),
list(beta1=c(NA,-0.5,0.5,0,0),beta2=c(NA,-0.5,0.5,0,0),c1=c(NA,-0.5,0.5,0,0),c2=c(NA,-0.5,0.5,0,0),tau=c(NA,1,1,1,1),beta0=c(NA,-0.5,0.5,0,0),delta=structure(.Data=c(NA,NA,NA,NA,NA,NA,
-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,-0.5,0.5,0,0),.Dim=c(5,6))) )
model604 <- bugs(data, inits, parameters,model.file="C:/Users/~~/model604.odc",
debug=TRUE,n.chains=2, n.iter=2000, n.burnin=500, bugs.directory="C:/Program Files/WinBUGS14/" )'
如何解决此错误?
我试图将init的NA更改为0,但是它不起作用,并给了我另一个错误消息。
数据遵循矩形格式,但是没问题
我想,模型和数据的语法转换是可以的。
我应该添加先决条件吗?