无法将“有效的R编程”的Bookdown源代码编译为PDF

Question

我正在尝试在Windows 7计算机上使用RStudio编译Efficient R Programming的PDF版本。使用说明here，我可以编译HTML版本，但是PDF版本的代码失败。运行下面的代码（乍看起来似乎可以正常运行）后，我收到以下警告消息：

## For pdf
bookdown::render_book("index.Rmd", output_format = bookdown::pdf_book())

output file: _main.knit.md

"C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS _main.utf8.md --to latex --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash --output _main.tex --table-of-contents --toc-depth 2 --template "C:\R\R-3.4.4\library\rmarkdown\rmd\latex\default-1.17.0.2.tex" --number-sections --highlight-style tango --latex-engine pdflatex --variable graphics=yes --variable "geometry:margin=1in" --variable "compact-title:yes" --variable tables=yes --standalone --filter pandoc-citeproc 
Error: Failed to compile _main.tex.
In addition: Warning messages:
1: In file.remove("voc_voyages.xlsx") :
  cannot remove file 'voc_voyages.xlsx', reason 'No such file or directory'
2: In connection_release(conn@ptr) :
  There are 1 result in use. The connection will be released when they are closed
3: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  no date field in DESCRIPTION file of package 'benchmarkme'
4: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  could not determine year for 'benchmarkme' from package DESCRIPTION file
5: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  no date field in DESCRIPTION file of package 'bookdown'
6: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  could not determine year for 'bookdown' from package DESCRIPTION file
7: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  no date field in DESCRIPTION file of package 'efficient'
8: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  could not determine year for 'efficient' from package DESCRIPTION file
9: running command '"pdflatex" -halt-on-error -interaction=batchmode "_main.tex"' had status 127 
Please delete _main.Rmd after you finish debugging the error.

我找到了this discussion of MikTeX vs tinytex。然后，我安装了tinytex，现在收到此（略有不同）错误：

## For pdf
bookdown::render_book("index.Rmd", output_format = bookdown::pdf_book())

    label: unnamed-chunk-235

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 $ message: logi FALSE


Attaching package: 'Matrix'

The following object is masked from 'package:tidyr':

    expand


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 $ echo     : logi FALSE
 $ out.width: chr "100%"
 $ fig.cap  : chr "Code profiling of the optimised code."


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label: 7-5 (with options) 
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Building shared library for Rcpp code chunk...

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Attaching package: 'lubridate'

The following objects are masked from 'package:data.table':

    hour, isoweek, mday, minute, month, quarter, second, wday,
    week, yday, year

The following object is masked from 'package:base':

    date


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tweaking fortunes

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output file: _main.knit.md

"C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS _main.utf8.md --to latex --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash --output _main.tex --table-of-contents --toc-depth 2 --template "C:\R\R-3.4.4\library\rmarkdown\rmd\latex\default-1.17.0.2.tex" --number-sections --highlight-style tango --latex-engine pdflatex --variable graphics=yes --variable "geometry:margin=1in" --variable "compact-title:yes" --variable tables=yes --standalone --filter pandoc-citeproc 

Output created: _book/_main.pdf
Error in tools::file_path_as_absolute(output_file) : 
  file '_book/_main.pdf' does not exist
In addition: Warning messages:
1: In file.remove("voc_voyages.xlsx") :
  cannot remove file 'voc_voyages.xlsx', reason 'No such file or directory'
2: In connection_release(conn@ptr) :
  There are 1 result in use. The connection will be released when they are closed
3: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  no date field in DESCRIPTION file of package 'benchmarkme'
4: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  could not determine year for 'benchmarkme' from package DESCRIPTION file
5: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  no date field in DESCRIPTION file of package 'bookdown'
6: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  could not determine year for 'bookdown' from package DESCRIPTION file
7: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  no date field in DESCRIPTION file of package 'efficient'
8: In citation(pkg, auto = if (pkg == "base") NULL else TRUE) :
  could not determine year for 'efficient' from package DESCRIPTION file
9: running command '"pdflatex" -halt-on-error -interaction=batchmode "_main.tex"' had status 1 
10: In readLines(logfile) : incomplete final line found on '_main.log'
Please delete _main.Rmd after you finish debugging the error.

基于下面@jaySf的评论，我运行了这段代码，但仍然遇到相同的错误：

remove.packages("rmarkdown")
install.packages("devtools")
library(devtools)
install_version("rmarkdown", version = "1.8")

## For pdf
bookdown::render_book("index.Rmd", output_format = bookdown::pdf_book())

任何建议将不胜感激。谢谢。