我正在尝试设置一个docker文件。 （https://hub.docker.com/r/karhohsbroadinstitute/docker-cellprofiler/）。
我使用
拉出了dockerfiledocker pull karhohsbroadinstitute/docker-cellprofiler
然后我使用sudo docker run 08ae61fbc6ee运行了
我得到以下输出
sara@instance-4:~$ sudo docker run 08ae61fbc6ee
[fix-attrs.d] applying owners & permissions fixes...
[fix-attrs.d] 00-runscripts: applying...
[fix-attrs.d] 00-runscripts: exited 0.
[fix-attrs.d] done.
[cont-init.d] executing container initialization scripts...
[cont-init.d] done.
[services.d] starting services
[services.d] done.
Usage: cellprofiler [options] [<output-file>])
where <output-file> is the optional filename for the output file of
measurements when running headless.
The flags -p, -r and -c are required for a headless run.
Options:
-h, --help show this help message and exit
-p PIPELINE_FILENAME, --pipeline=PIPELINE_FILENAME, --project=PIPELINE_FILENAME
Load this pipeline file or project on startup. If
specifying a pipeline file rather than a project, the
-i flag is also needed unless the pipeline is saved
with the file list.
-c, --run-headless Run headless (without the GUI)
-r, --run Run the given pipeline on startup
-o OUTPUT_DIRECTORY, --output-directory=OUTPUT_DIRECTORY
Make this directory the default output folder
-i IMAGE_DIRECTORY, --image-directory=IMAGE_DIRECTORY
Make this directory the default input folder
-f FIRST_IMAGE_SET, --first-image-set=FIRST_IMAGE_SET
The one-based index of the first image set to process
-l LAST_IMAGE_SET, --last-image-set=LAST_IMAGE_SET
The one-based index of the last image set to process
-g GROUPS, --group=GROUPS
Restrict processing to one grouping in a grouped
pipeline. For instance, "-g ROW=H,COL=01", will
process only the group of image sets that match the
keys.
--plugins-directory=PLUGINS_DIRECTORY
CellProfiler will look for plugin modules in this
directory (headless-only).
--version Print the version and exit
-t TEMP_DIR, --temporary-directory=TEMP_DIR
Temporary directory. CellProfiler uses this for
downloaded image files and for the measurements file,
if not specified. The default is /tmp
-d DONE_FILE, --done-file=DONE_FILE
The path to the "Done" file, written by CellProfiler
shortly before exiting
--measurements Open the pipeline file specified by the -p switch and
print the measurements made by that pipeline
--print-groups=PRINT_GROUPS_FILE
Open the measurements file following the --print-
groups switch and print the groups in its image sets.
The measurements file should be generated using
CreateBatchFiles. The output is a JSON-encoded data
structure containing the group keys and values and the
image sets in each group.
--get-batch-commands=BATCH_COMMANDS_FILE
Open the measurements file following the --get-batch-
commands switch and print one line to the console per
group. The measurements file should be generated using
CreateBatchFiles and the image sets should be grouped
into the units to be run. Each line is a command to
invoke CellProfiler. You can use this option to
generate a shell script that will invoke CellProfiler
on a cluster by substituting "CellProfiler" with your
invocation command in the script's text, for instance:
CellProfiler --get-batch-commands Batch_data.h5 | sed
s/CellProfiler/farm_jobs.sh. Note that CellProfiler
will always run in headless mode when --get-batch-
commands is present and will exit after generating the
batch commands without processing any pipeline.
--images-per-batch=IMAGES_PER_BATCH
For pipelines that do not use image grouping this
option specifies the number of images that should be
processed in each batch if --get-batch-commands is
used. Defaults to 1.
--data-file=DATA_FILE
Specify the location of a .csv file for LoadData. If
this switch is present, this file is used instead of
the one specified in the LoadData module.
--file-list=IMAGE_SET_FILE
Specify a file list of one file or URL per line to be
used to initially populate the Images module's file
list.
--do-not-write-schema
Do not execute the schema definition and other per-
experiment SQL commands during initialization when
running a pipeline in batch mode.
--write-schema-and-exit
Create the experiment database schema and exit
--omero-credentials=OMERO_CREDENTIALS
Enter login credentials for OMERO. The credentials are
entered as comma-separated key/value pairs with keys,
"host" - the DNS host name for the OMERO server,
"port" - the server's port # (typically 4064), "user"
- the name of the connecting user, "password" - the
connecting user's password, "session-id" - the session
ID for an OMERO client session., "config-file" - the
path to the OMERO credentials config file. A typical
set of credentials might be: --omero-credentials
host=demo.openmicroscopy.org,port=4064,session-
id=atrvomvjcjfe7t01e8eu59amixmqqkfp
-L LOG_LEVEL, --log-level=LOG_LEVEL
Set the verbosity for logging messages: 10 or DEBUG
for debugging, 20 or INFO for informational, 30 or
WARNING for warning, 40 or ERROR for error, 50 or
CRITICAL for critical, 50 or FATAL for fatal.
Otherwise, the argument is interpreted as the file
name of a log configuration file (see
http://docs.python.org/library/logging.config.html for
file format)
cellprofiler exited 0
[cont-finish.d] executing container finish scripts...
[cont-finish.d] done.
[s6-finish] syncing disks.
[s6-finish] sending all processes the TERM signal.
[s6-finish] sending all processes the KILL signal and exiting.
我拼命尝试运行cellprofiler GUI而不处理依赖项，并且似乎运行并没有做任何事情。非常感谢您的帮助。
当我输入
xhost +local:root
我明白了
xhost: unable to open display ""