我有这个数据框:
gene_symbol<-c("DADA","SDAASD","SADDSD","SDADD","ASDAD","XCVXCVX","EQWESDA","DASDADS","SDASDASD","DADADASD","sdaadfd","DFSD","SADADDAD","SADDADADA","DADSADSASDWQ","SDADASDAD","ASD","DSADD")
panel<-c("growth","growth","growth","growth","big","big","big","small","small","dfgh","DF","DF","DF","DF","DF","gh","DF","DF")
ASDDA<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDb<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf1<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf2<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf3<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf4<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf5<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDA1<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDb1<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf1<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf11<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf21<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf31<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf41<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
ASDDAf51<-c("normal","over","low","over","normal","over","low","over","normal","over","DF","DF","DF","DF","DF","DF","DF","DF")
Gene_states22 <- data.frame(gene_symbol, panel, ASDDA, ASDDb, ASDDAf, ASDDAf1, ASDDAf2,
ASDDAf3, ASDDAf4, ASDDAf5, ASDDA1, ASDDb1, ASDDAf1, ASDDAf11,
ASDDAf21, ASDDAf31, ASDDAf41, ASDDAf51)
然后我创建一个热图:
library(plotly)
library(ggplot2); library(reshape2)
HG3 <- split(Gene_states22[,1:15], Gene_states22$panel)
HG4 <- melt(HG3, id.vars= c("gene_symbol","panel"))
HG4 <- HG4[,-5]
HG5 <- split(HG4, HG4$panel)
pp <- ggplot(HG4, aes(gene_symbol,variable)) +
geom_tile(aes(fill = value),
colour = "grey50") +
facet_grid(~panel, scales = "free") +
scale_fill_manual(values = c("white", "red", "blue", "black", "yellow", "green", "brown")) +
labs(title = "Heatmap", x = "gene_symbol", y = "sample", fill = "value") +
guides(fill = FALSE)+
theme(panel.background = element_rect(fill = NA),
panel.spacing = unit(0.5, "lines"), ## It was here where you had a 0 for distance between facets. I replaced it by 0.5 .
strip.placement = "outside")
ggplotly(pp,
width = 1350, height = 600) %>%
# note: specifying width / height in layout() has been deprecated
# in recent versions of plotly. when I used it that way, I got
# a warning to specify it within ggplotly() instead.
layout(autosize = F,
hoverlabel = list(bgcolor = "white",
font = list(family = "sans serif", size = 9, color = "black")))
您可以看到,根据panel
,此热图分为6个子热图。每个面板都包含一些gene_symbol
。现在,每个面板中的列宽都不同。我想做的是使列宽全部相同,而与每个面板中的基因数量无关。
我认为很明显ggplotly()
导致了列宽问题。