如何在R(在EC2中)中使用Sparklyr从S3读取数据?

时间:2018-06-29 05:59:39

标签: r apache-spark amazon-s3 amazon-ec2 sparklyr

我已经尝试了Github / Stackoverflow上将近100的代码来实现我的目标,但是一切都是徒劳的。...所以,这是我试图从EC2的RStudio中的Sparklyr访问S3数据文件的代码。将不胜感激。只有代码的最后一行抛出错误“错误:java.lang.RuntimeException:java.lang.ClassNotFoundException:类org.apache.hadoop.fs.s3a.S3AFileSystem”

config <- spark_config()
sc <- spark_connect(master = "local",config = config,version = "2.1.0")

#Get spark context  
ctx <- sparklyr::spark_context(sc)

#Use below to set the java spark context
jsc <- invoke_static(sc,"org.apache.spark.api.java.JavaSparkContext","fromSparkContext",ctx)


#set the s3 configs:  
hconf <- jsc %>% invoke("hadoopConfiguration")  
hconf %>% invoke("set","fs.s3a.access.key", "xxx")  
hconf %>% invoke("set","fs.s3a.secret.key","xxx")  

# check if spar session is active
sparklyr::spark_connection_is_open(sc=sc)


small_file = "s3a://............../iris.csv"

temp<-spark_read_csv(sc,name = "iris",path=small_file,infer_schema = TRUE)

错误:java.lang.RuntimeException:java.lang.ClassNotFoundException:未找到类org.apache.hadoop.fs.s3a.S3AFileSystem;

下面提供了错误转储。

  Error: java.lang.RuntimeException: java.lang.ClassNotFoundException: Class org.apache.hadoop.fs.s3a.S3AFileSystem not found
at org.apache.hadoop.conf.Configuration.getClass(Configuration.java:2195)
at org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:2654)
at org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:2667)
at org.apache.hadoop.fs.FileSystem.access$200(FileSystem.java:94)
at org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:2703)
at org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:2685)
at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:373)
at org.apache.hadoop.fs.Path.getFileSystem(Path.java:295)
at org.apache.spark.sql.execution.datasources.DataSource$$anonfun$14.apply(DataSource.scala:372)
at org.apache.spark.sql.execution.datasources.DataSource$$anonfun$14.apply(DataSource.scala:370)
at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
at scala.collection.immutable.List.foreach(List.scala:381)
at scala.collection.TraversableLike$class.flatMap(TraversableLike.scala:241)
at scala.collection.immutable.List.flatMap(List.scala:344)
at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:370)
at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:152)
at org.apache.spark.sql.DataFrameReader.csv(DataFrameReader.scala:415)
at org.apache.spark.sql.DataFrameReader.csv(DataFrameReader.scala:352)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at sparklyr.Invoke.invoke(invoke.scala:137)
at sparklyr.StreamHandler.handleMethodCall(stream.scala:123)
at sparklyr.StreamHandler.read(stream.scala:66)
at sparklyr.BackendHandler.channelRead0(handler.scala:51)
at sparklyr.BackendHandler.channelRead0(handler.scala:4)
at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:367)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:353)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:346)
at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:102)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:367)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:353)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:346)
at io.netty.handler.codec.ByteToMessageDecoder.fireChannelRead(ByteToMessageDecoder.java:293)
at io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:267)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:367)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:353)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:346)
at io.netty.channel.DefaultChannelPipeline$HeadContext.channelRead(DefaultChannelPipeline.java:1294)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:367)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:353)
at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:911)
at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:652)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:575)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:489)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:451)
at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:140)
at io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:144)
at java.lang.Thread.run(Unknown Source)

原因:java.lang.ClassNotFoundException:找不到类org.apache.hadoop.fs.s3a.S3AFileSystem     在org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2101)     在org.apache.hadoop.conf.Configuration.getClass(Configuration.java:2193)     ... 52更多

0 个答案:

没有答案