Question

我克隆了一个使用docker-compose的github docker设置。如果作者证实，代码运行良好，我认为我在配置期间遗漏了一些东西

根据说明我运行以下命令：

EXPERIMENT=${linear} docker-compose up --build

我的docker-compose.yml有以下代码：

cph:
build: ./cph
dockerfile: Dockerfile.${EXPERIMENT}
volumes:
  - ../deepsurv:/DeepSurv/deepsurv
  - ./scripts:/scripts
  - ./data/${EXPERIMENT}:/shared/data
  - ./results/${EXPERIMENT}:/shared/results

deepsurv:
build: ./deepsurv
dockerfile: Dockerfile.${EXPERIMENT}
volumes:
  - ../deepsurv:/DeepSurv/deepsurv
  - ./scripts:/scripts
  - ./data/${EXPERIMENT}:/shared/data
  - ./results/${EXPERIMENT}:/shared/results

rsf:
build: ./rsf
dockerfile: Dockerfile.${EXPERIMENT}
volumes:
  - ../deepsurv:/DeepSurv/deepsurv
  - ./scripts:/scripts
  - ./data/${EXPERIMENT}:/shared/data
  - ./results/${EXPERIMENT}:/shared/results

我使用变量Experiment = linear来调用第一个docker但是我收到了警告并出现以下错误：

 WARNING: The linear variable is not set. Defaulting to a blank string.
 Building cph
 ERROR: Cannot locate specified Dockerfile: Dockerfile.

我的docker-compose.yml的结构如下： / DeepSurv / experiments $ tree

/ DeepSurv / experiments $ tree

.
├── cph
│   ├── Dockerfile.gaussian
│   ├── Dockerfile.gbsg
│   ├── Dockerfile.linear
│   ├── Dockerfile.metabric
│   ├── Dockerfile.support
│   ├── Dockerfile.treatment
│   └── Dockerfile.whas
├── data
│   ├── gaussian
│   │   └── gaussian_survival_data.h5
│   ├── gbsg
│   │   └── gbsg_cancer_train_test.h5
│   ├── linear
│   │   ├── linear_survival_data.h5
│   │   └── logs
│   │       └── tensorboard_
│   │           └── shared
│   │               └── data
│   │                   ├── linear_survival_data.h5_320635bd-e6f6-49f9-    ba02-2d2aba6d25d2
│   │                   │   └──     events.out.tfevents.1501950449.ebe916c018ac
│   │                   ├── linear_survival_data.h5_88d7b4e3-5a3b-    4380-8b22-7c7a4b0aa1ee
│   │                   │   └──      events.out.tfevents.1501951016.152ea285d90e
│   │                   ├──      linear_survival_data.h5_e215d084-3302-4248-939d-f5e43cfe63b5
│   │                   │   └──      events.out.tfevents.1501950494.152ea285d90e
│   │                   └──      linear_survival_data.h5_ea209c15-00d7-4a57-8fc8-046e08038eba
│   │                       └──      events.out.tfevents.1501950372.411602be3a6f
│   ├── metabric
│   │   └── metabric_IHC4_clinical_train_test.h5
│   ├── support
│   │   ├── logs
│   │   │   └── tensorboard_
│   │   │       └── shared
│   │   │           └── data
│   │   │               ├── support_train_test.h5_b1f908ae-d03c-4f7c-aab9-     ae01ac9d31f7
│   │   │               │   └──     events.out.tfevents.1501953943.cd9ea224808d
│   │   │               └── support_train_test.h5_df8bcb48-c77e-46f8-    b33c-112cb940a285
│   │   │                   └──     events.out.tfevents.1501954035.bf1b5f1da709
│   │   └── support_train_test.h5
│   ├── treatment
│   │   └── sim_treatment_dataset.h5
│   └── whas
│       └── whas_train_test.h5
├── deepsurv
│   ├── Dockerfile.gaussian
│   ├── Dockerfile.gbsg
│   ├── Dockerfile.linear
│   ├── Dockerfile.metabric
│   ├── Dockerfile.support
│   ├── Dockerfile.treatment
│   ├── Dockerfile.whas
│   └── models
│       ├── gaussian_model_0.json
│       ├── gaussian_model_selu_revision.0.json
│       ├── gaussian_model_selu_revision.1.json
│       ├── gbsg_model_selu_revision.0.json
│       ├── gbsg_selu_adam_model_0.json
│       ├── linear_model_selu_0.json
│       ├── linear_model_selu_revision.0.json
│       ├── linear_model_selu_revision.json
│       ├── metabric_IHC4_clinical_adam_0.json
│       ├── metabric_model_selu_revision.0.json
│       ├── support_model_selu_revision.0.json
│       ├── support_selu_model_adam_0.json
│       ├── treatment_adam_selu_model_0.json
│       ├── treatment_model_selu_revision.0.json
│       ├── whas_model_selu_0.json
│       └── whas_model_selu_revision.0.json
├── docker-compose-original.yml
├── docker-compose.yml
├── README.md
├── rsf
│   ├── Dockerfile.gaussian
│   ├── Dockerfile.gbsg
│   ├── Dockerfile.linear
│   ├── Dockerfile.metabric
│   ├── Dockerfile.support
│   ├── Dockerfile.treatment
│   └── Dockerfile.whas
└── scripts
├── cph_run.py
├── deepsurv_run.py

docker撰写的版本是：

docker-compose version 
docker-compose version 1.8.0, build unknown
docker-py version: 1.9.0
CPython version: 2.7.12

OpenSSL版本：OpenSSL 1.0.2g 2016年3月1日

你能帮助我克服这个错误吗？

Answer 1

我认为你应该使用：

EXPERIMENT=linear docker-compose up --build

您希望它使用实际的单词“linear”

刚试过：

.
├── cph
│   └── Dockerfile.linear
└── docker-compose.yml

和这个docker-compose.yml

cph:
  build: ./cph
  dockerfile: Dockerfile.${EXPERIMENT}

和Dockerfile.linear：

FROM alpine:latest

和上面提到的命令，它就像这样工作。您必须从docker-compose.yml文件所在的文件夹运行docker-compose命令，其余文件夹需要相对于该文件夹。

构建cph错误：找不到指定的Dockerfile：Dockerfile

1 个答案: