Question

我在ggplot2中使用这些数据制作了以下条形图：

情节：通过比较显着的细菌家族

head(data):
                            log2FoldChange                  Rank5      comparison
New.CleanUp.ReferenceOTU80        7.356791 f__Desulfovibrionaceae control vs high
29323423                         10.645582 f__Desulfovibrionaceae control vs high
New.CleanUp.ReferenceOTU121       7.128041 f__Desulfovibrionaceae control vs high
4288072                         -15.270046   f__Hyphomicrobiaceae control vs scar
1658672                           8.017656   f__Hyphomicrobiaceae control vs scar
9335464                         -13.997070       f__Neisseriaceae control vs scar

这个命令：

ggplot(data = order.merge, 
       aes(x = comparison, y = log2FoldChange,
           group = reorder(row.names(order.merge, log2FoldChange)))) + 
  geom_bar(stat = "identity", aes(fill = Rank5), position=position_dodge()) + 
  ylab("Log2 Fold Change") + 
  coord_flip()

目前，Rank5名称在比较类别中按字母顺序排序。但是，该图不按Rank名称排序。例如，在组对照与NH4的图中，Rhodobacteraceae的三个条彼此不相邻。其次，对照vs NH4有5个脂肪条，而对照和高有很多瘦条。

1）如何按排名重新排序？

2）我可以调整每个比较的大小，以便所有条形宽度相等吗？

谢谢！

可重复的例子：

dput(order.merge[20:40, ])

structure(list(log2FoldChange = c(-12.6763917924836, 18.4867204578785, 
5.87185962697414, 5.66255934712844, 9.90661771655056, 11.7009664985686, 
-15.8045780775922, -17.9176399760384, -11.7160496642962, -16.8548291527408, 
12.0062377518766, 9.27678750597363, -16.3219881932917, -7.35815162561094, 
-20.4898406326553, -21.4584754940589, 6.54572004269336, 11.8012634251803, 
10.2032049438921, -12.5771068977973, 7.01101590101165), Rank5 = structure(c(11L, 
14L, 17L, 18L, 19L, NA, 3L, 7L, 7L, 7L, NA, 2L, 4L, 4L, 4L, 7L, 
7L, 7L, 7L, 7L, 7L), .Names = c("4445466", "1010113", "321533", 
"New.CleanUp.ReferenceOTU123", "800197", "369965", "428807", 
"3834498", "904675", "548736", "369965", "2932342", "321405", 
"1085703", "3633321", "4421174", "4313781", "146037", "248590", 
"4420764", "1123147"), .Label = c("f__Cyanobacteriaceae", "f__Desulfovibrionaceae", 
"f__Hyphomicrobiaceae", "f__Moraxellaceae", "f__Neisseriaceae", 
"f__Pseudomonadaceae", "f__Rhodobacteraceae", "f__Sphingomonadaceae", 
"f__", "f__Alcanivoracaceae", "f__Streptococcaceae", "f__Staphylococcaceae", 
"f__Vibrionaceae", "f__Enterobacteriaceae", "f__Pirellulaceae", 
"f__Xanthomonadaceae", "f__[Amoebophilaceae]", "f__Endozoicimonaceae", 
"f__Hyphomonadaceae"), class = "factor"), comparison = c("control vs high", 
"control vs high", "control vs high", "control vs high", "control vs high", 
"control vs high", "control vs NH4", "control vs NH4", "control vs NH4", 
"control vs NH4", "control vs NH4", "control vs NO3", "control vs NO3", 
"control vs NO3", "control vs NO3", "control vs NO3", "control vs NO3", 
"control vs NO3", "control vs NO3", "control vs NO3", "control vs NO3"
)), .Names = c("log2FoldChange", "Rank5", "comparison"), row.names = c("44454662", 
"10101131", "321533", "New.CleanUp.ReferenceOTU123", "800197", 
"3699652", "4288073", "3834498", "9046752", "5487361", "3699653", 
"29323424", "3214051", "10857031", "36333212", "44211743", "43137811", 
"1460372", "248590", "44207641", "11231471"), class = "data.frame")

Answer 1

要按排名排序，您需要将来电更新为reorder()以使用Rank5（见下文）。

要获得相同宽度的条形，请安装ggplot2的开发版本并使用position_dodge(preserve = "single")。

devtools::install_github("tidyverse/ggplot2")
library("ggplot2")

ggplot(
  data = order.merge,
  aes(
    x = comparison,
    y = log2FoldChange,
    # reorder by Rank5 instead of log2FoldChange
    group = reorder(row.names(order.merge), as.numeric(Rank5))
  )) + 
  geom_bar(
    stat = "identity",
    aes(fill = Rank5),
    # preserve individual width of bars
    position = position_dodge(preserve = "single")
  ) + 
  ylab("Log2 Fold Change") + 
  coord_flip()

使用ggplot重新排序组中的条形并按宽度调整组

1 个答案: