我想知道是否有可能只在图表上显示选定的组,或者制作一些个人图表,因为在我的PCA中我有超过10个组,并且在一个图表上不易读。我将介绍虹膜数据的问题。
library(ggplot2)
library(factoextra)
data(iris)
res.pca <- prcomp(iris[, -5], scale = TRUE)
fviz_pca_ind(res.pca, label="none", habillage=iris$Species)
因此,例如,我是否可以在图表上仅显示一组setos?或者只有setosa和versicolor?
答案 0 :(得分:1)
fviz_pca_ind
支持select.ind
参数的数据子集:
select.ind a selection of individuals/variables to be drawn. Allowed values are NULL or a list containing the arguments name, cos2 or contrib: name: is a character vector containing individuals/variables to be drawn cos2: if cos2 is in [0, 1], ex: 0.6, then individuals/variables with a cos2 > 0.6 are drawn. if cos2 > 1, ex: 5, then the top 5 individuals/variables with the highest cos2 are drawn. contrib: if contrib > 1, ex: 5, then the top 5 individuals/variables with the highest cos2 are drawn
无法直接指定setosa
,但您可以指定setosa
行的索引。
setosa_indices <- rownames(iris[iris$Species == "setosa",])
fviz_pca_ind(res.pca, label = "none",
habillage = iris$Species,
select.ind = list(name = setosa_indices))
结果: