使用重叠分割序列的更好方法是?

时间:2018-01-22 12:41:51

标签: python split overlap

我需要一个函数将一个iterable拆分成块,并选择在块之间重叠。

我写了下面的代码,它给了我正确的输出,但这是非常低效(慢)。我无法弄清楚如何加快速度。有更好的方法吗?

def split_overlap(seq, size, overlap):
    '''(seq,int,int) => [[...],[...],...]
    Split a sequence into chunks of a specific size and overlap.
    Works also on strings! 

    Examples:
        >>> split_overlap(seq=list(range(10)),size=3,overlap=2)
        [[0, 1, 2], [1, 2, 3], [2, 3, 4], [3, 4, 5], [4, 5, 6], [5, 6, 7], [6, 7, 8], [7, 8, 9]]

        >>> split_overlap(seq=range(10),size=3,overlap=2)
        [range(0, 3), range(1, 4), range(2, 5), range(3, 6), range(4, 7), range(5, 8), range(6, 9), range(7, 10)]

        >>> split_overlap(seq=list(range(10)),size=7,overlap=2)
        [[0, 1, 2, 3, 4, 5, 6], [5, 6, 7, 8, 9]]
    '''
    if size < 1 or overlap < 0:
        raise ValueError('"size" must be an integer with >= 1 while "overlap" must be >= 0')
    result = []
    while True:
        if len(seq) <= size:
            result.append(seq)
            return result
        else:
            result.append(seq[:size])
            seq = seq[size-overlap:]

到目前为止测试结果:

l = list(range(10))
s = 4
o = 2
print(split_overlap(l,s,o))
print(list(split_overlap_jdehesa(l,s,o)))
print(list(nwise_overlap(l,s,o)))
print(list(split_overlap_Moinuddin(l,s,o)))
print(list(gen_split_overlap(l,s,o)))
print(list(itr_split_overlap(l,s,o)))

[[0, 1, 2, 3], [2, 3, 4, 5], [4, 5, 6, 7], [6, 7, 8, 9]]
[(0, 1, 2, 3), (2, 3, 4, 5), (4, 5, 6, 7), (6, 7, 8, 9)]
[(0, 1, 2, 3), (2, 3, 4, 5), (4, 5, 6, 7), (6, 7, 8, 9), (8, 9, None, None)] #wrong
[[0, 1, 2, 3], [2, 3, 4, 5], [4, 5, 6, 7], [6, 7, 8, 9], [8, 9]] #wrong
[[0, 1, 2, 3], [2, 3, 4, 5], [4, 5, 6, 7], [6, 7, 8, 9]]
[(0, 1, 2, 3), (2, 3, 4, 5), (4, 5, 6, 7), (6, 7, 8, 9)]

%%timeit
split_overlap(l,7,2)
718 ns ± 2.36 ns per loop (mean ± std. dev. of 7 runs, 1000000 loops each)

%%timeit
list(split_overlap_jdehesa(l,7,2))
4.02 µs ± 64.7 ns per loop (mean ± std. dev. of 7 runs, 100000 loops each)

%%timeit
list(nwise_overlap(l,7,2))
5.05 µs ± 102 ns per loop (mean ± std. dev. of 7 runs, 100000 loops each)

%%timeit
list(split_overlap_Moinuddin(l,7,2))
3.89 µs ± 78.7 ns per loop (mean ± std. dev. of 7 runs, 100000 loops each)

%%timeit
list(gen_split_overlap(l,7,2))
1.22 µs ± 13.3 ns per loop (mean ± std. dev. of 7 runs, 1000000 loops each)

%%timeit
list(itr_split_overlap(l,7,2))
3.41 µs ± 36.7 ns per loop (mean ± std. dev. of 7 runs, 100000 loops each)

将较长的列表作为输入:

l = list(range(100000))

%%timeit
split_overlap(l,7,2)
4.27 s ± 132 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)

%%timeit
list(split_overlap_jdehesa(l,7,2))
31.1 ms ± 495 µs per loop (mean ± std. dev. of 7 runs, 10 loops each)

%%timeit
list(nwise_overlap(l,7,2))
5.74 ms ± 66 µs per loop (mean ± std. dev. of 7 runs, 100 loops each)

%%timeit
list(split_overlap_Moinuddin(l,7,2))
16.9 ms ± 89.7 µs per loop (mean ± std. dev. of 7 runs, 100 loops each)

%%timeit
list(gen_split_overlap(l,7,2))
4.54 ms ± 22.3 µs per loop (mean ± std. dev. of 7 runs, 100 loops each)

%%timeit
list(itr_split_overlap(l,7,2))
19.1 ms ± 240 µs per loop (mean ± std. dev. of 7 runs, 100 loops each)

从其他测试(此处未报告),结果发现对于小型列表len(list) <= 100,我的原始实现split_overlap()是最快的。但是对于任何大于此的事情,到目前为止,gen_split_overlap()是最有效的解决方案。

4 个答案:

答案 0 :(得分:3)

有时可读性与速度有关。一个简单的生成器迭代索引,生成切片可以在合理的时间内完成工作:

def gen_split_overlap(seq, size, overlap):        
    if size < 1 or overlap < 0:
        raise ValueError('size must be >= 1 and overlap >= 0')

    for i in range(0, len(seq) - overlap, size - overlap):            
        yield seq[i:i + size]

如果你想处理潜在的无限可迭代,你只需要保持重叠项与前一个yield和slice size - 重叠新项:

def itr_split_overlap(iterable, size, overlap):
    itr = iter(iterable)

    # initial slice, in case size exhausts iterable on the spot
    next_ = tuple(islice(itr, size))
    yield next_
    # overlap for initial iteration
    prev = next_[-overlap:] if overlap else ()

    # For long lists the repeated calls to a lambda are slow, but using
    # the 2-argument form of `iter()` is in general a nice trick.
    #for chunk in iter(lambda: tuple(islice(itr, size - overlap)), ()):

    while True:
        chunk = tuple(islice(itr, size - overlap))

        if not chunk:
            break

        next_ = (*prev, *chunk)
        yield next_

        # overlap == 0 is a special case
        if overlap:
            prev = next_[-overlap:]

答案 1 :(得分:2)

如果必须满足块大小的标准

您可以使用zip列表理解创建自定义函数,以实现此目的:

def split_overlap(seq, size, overlap):
     return [x for x in zip(*[seq[i::size-overlap] for i in range(size)])]

示例运行

# Chunk size: 3
# Overlap: 2 
>>> split_overlap(list(range(10)), 3, 2)
[(0, 1, 2), (1, 2, 3), (2, 3, 4), (3, 4, 5), (4, 5, 6), (5, 6, 7), (6, 7, 8), (7, 8, 9)]

# Chunk size: 3
# Overlap: 1
>>> split_overlap(list(range(10)), 3, 1)
[(0, 1, 2), (2, 3, 4), (4, 5, 6), (6, 7, 8)]

# Chunk size: 4
# Overlap: 1
>>> split_overlap(list(range(10)), 4, 1)
[(0, 1, 2, 3), (3, 4, 5, 6), (6, 7, 8, 9)]

# Chunk size: 4
# Overlap: 2
>>> split_overlap(list(range(10)), 4, 2)
[(0, 1, 2, 3), (2, 3, 4, 5), (4, 5, 6, 7), (6, 7, 8, 9)]

# Chunk size: 4
# Overlap: 1
>>> split_overlap(list(range(10)), 4, 3)
[(0, 1, 2, 3), (1, 2, 3, 4), (2, 3, 4, 5), (3, 4, 5, 6), (4, 5, 6, 7), (5, 6, 7, 8), (6, 7, 8, 9)]

如果还希望剩余的块不符合块大小的标准

如果你想显示块,即使它们不满足块大小的先决条件,那么你应该使用Python 3.x中的itertools.zip_longest(相当于{ Python 2.x中的{3}}。

此外,这是动态屈服动态变体,如果您有大量列表,这在内存方面更有效:

# Python 3.x
from itertools import zip_longest as iterzip

# Python 2.x
from itertools import izip_longest as iterzip

# Generator function
def split_overlap(seq, size, overlap):
    for x in iterzip(*[my_list[i::size-overlap] for i in range(size)]):
        yield tuple(i for i in x if i!=None) if x[-1]==None else x
        #      assuming that your initial list is  ^
        #      not containing the `None`, use of `iterzip` is based
        #      on the same assumption  

示例运行:

#     v  type-cast to list in order to display the result, 
#     v  not required during iterations
>>> list(split_overlap(list(range(10)),7,2))
[[0, 1, 2, 3, 4, 5, 6], [5, 6, 7, 8, 9]]

答案 2 :(得分:1)

你的方法与它将获得的一样好,你需要轮询序列/ iterable并构建块,但无论如何,这是一个与iterables一起使用并使用deque的惰性版本性能:

from collections import deque

def split_overlap(iterable, size, overlap=0):
    size = int(size)
    overlap = int(overlap)
    if size < 1 or overlap < 0 or overlap >= size:
        raise ValueError()
    pops = size - overlap
    q = deque(maxlen=size)
    for elem in iterable:
        q.append(elem)
        if len(q) == size:
            yield tuple(q)
            for _ in range(pops):
                q.popleft()
    # Yield final incomplete tuple if necessary
    if len(q) > overlap:
        yield tuple(q)

>>> list(split_overlap(range(10), 4, 2))
[(0, 1, 2, 3), (3, 4, 5, 6), (6, 7, 8, 9)]
>>> list(split_overlap(range(10), 5, 2))
[(0, 1, 2, 3, 4), (3, 4, 5, 6, 7), (6, 7, 8, 9)]

注意:如果输入没有产生确切数量的块,则生成器会产生最后一个不完整的元组(参见第二个示例)。如果您想避免这种情况,请删除最终的if len(q) > overlap: yield tuple(q)

答案 3 :(得分:0)

您可以尝试使用

itertools.izip(...)

这对大型列表很有用,因为它返回迭代器而不是列表。

像这样:

import itertools
def split_overlap(iterable, size, overlap):
    '''(iter,int,int) => [[...],[...],...]
    Split an iterable into chunks of a specific size and overlap.
    Works also on strings! 

    Examples:
        >>> split_overlap(iterable=list(range(10)),size=3,overlap=2)
        [[0, 1, 2], [1, 2, 3], [2, 3, 4], [3, 4, 5], [4, 5, 6], [5, 6, 7], [6, 7, 8], [7, 8, 9]]

        >>> split_overlap(iterable=range(10),size=3,overlap=2)
        [range(0, 3), range(1, 4), range(2, 5), range(3, 6), range(4, 7), range(5, 8), range(6, 9), range(7, 10)]
    '''
    if size < 1 or overlap < 0:
        raise ValueError('"size" must be an integer with >= 1 while "overlap" must be >= 0')
    result = []
    for i in itertools.izip(*[iterable[i::size-overlap] for i in range(size)]):
        result.append(i)
    return result