错误:美学必须是长度1或与数据(6)相同:x,y,fill

时间:2017-12-17 22:53:25

标签: r ggplot2 errorbar

我正在创建一个ggplot分组条形图,其中包含学校作业的错误栏。我对ggplot很新,但是作业规定我必须使用ggplot作为这个情节。但是我不断收到错误说"错误:美学必须是长度1或与数据(6)相同:x,y,fill"。我该如何解决?为我的数据混乱提前道歉。

drought = read.csv("drought_elevation.csv")
drought
#Packages
> drought = read.csv("drought_elevation.csv")
> drought
            spec elevation   treat height
1   A. australis       low    ctrl   24.9
2   A. australis       low    ctrl   25.3
3   A. australis       low    ctrl   25.7
4   A. australis       low    ctrl   33.0
5   A. australis       low    ctrl   31.2
6   A. australis       low    ctrl   25.5
7   A. australis       low    ctrl   20.8
8   A. australis       low    ctrl   28.6
9   A. australis       low    ctrl   26.8
10  A. australis       low    ctrl   24.5
11     P. totara       low    ctrl   34.5
12     P. totara       low    ctrl   29.2
13     P. totara       low    ctrl   27.7
14     P. totara       low    ctrl   25.7
15     P. totara       low    ctrl   34.1
16     P. totara       low    ctrl   28.9
17     P. totara       low    ctrl   34.1
18     P. totara       low    ctrl   22.8
19     P. totara       low    ctrl   39.9
20     P. totara       low    ctrl   33.9
21       B. tawa       low    ctrl   44.7
22       B. tawa       low    ctrl   42.5
23       B. tawa       low    ctrl   37.9
24       B. tawa       low    ctrl   41.6
25       B. tawa       low    ctrl   39.5
26       B. tawa       low    ctrl   41.3
27       B. tawa       low    ctrl   37.5
28       B. tawa       low    ctrl   34.2
29       B. tawa       low    ctrl   39.7
30       B. tawa       low    ctrl   43.4
31  A. australis       mid    ctrl   26.3
32  A. australis       mid    ctrl   16.0
33  A. australis       mid    ctrl   25.8
34  A. australis       mid    ctrl   15.7
35  A. australis       mid    ctrl   26.3
36  A. australis       mid    ctrl   25.7
37  A. australis       mid    ctrl   17.9
38  A. australis       mid    ctrl   15.4
39  A. australis       mid    ctrl   22.3
40  A. australis       mid    ctrl   29.6
41     P. totara       mid    ctrl   22.4
42     P. totara       mid    ctrl   22.0
43     P. totara       mid    ctrl   31.3
44     P. totara       mid    ctrl   27.0
45     P. totara       mid    ctrl   29.6
46     P. totara       mid    ctrl   27.2
47     P. totara       mid    ctrl   20.0
48     P. totara       mid    ctrl   30.5
49     P. totara       mid    ctrl   24.7
50     P. totara       mid    ctrl   20.8
51       B. tawa       mid    ctrl   27.8
52       B. tawa       mid    ctrl   32.6
53       B. tawa       mid    ctrl   29.1
54       B. tawa       mid    ctrl   26.5
55       B. tawa       mid    ctrl   31.2
56       B. tawa       mid    ctrl   29.3
57       B. tawa       mid    ctrl   25.4
58       B. tawa       mid    ctrl   26.5
59       B. tawa       mid    ctrl   32.4
60       B. tawa       mid    ctrl   33.5
61  A. australis      high    ctrl   19.1
62  A. australis      high    ctrl   21.2
63  A. australis      high    ctrl   15.0
64  A. australis      high    ctrl   10.9
65  A. australis      high    ctrl   15.5
66  A. australis      high    ctrl   10.0
67  A. australis      high    ctrl    6.4
68  A. australis      high    ctrl   18.4
69  A. australis      high    ctrl   12.6
70  A. australis      high    ctrl   16.6
71     P. totara      high    ctrl   23.3
72     P. totara      high    ctrl   19.1
73     P. totara      high    ctrl   14.6
74     P. totara      high    ctrl   20.0
75     P. totara      high    ctrl   21.6
76     P. totara      high    ctrl   23.5
77     P. totara      high    ctrl   14.7
78     P. totara      high    ctrl   23.9
79     P. totara      high    ctrl   21.7
80     P. totara      high    ctrl   19.6
81       B. tawa      high    ctrl   25.6
82       B. tawa      high    ctrl   16.9
83       B. tawa      high    ctrl   34.8
84       B. tawa      high    ctrl   32.4
85       B. tawa      high    ctrl   20.3
86       B. tawa      high    ctrl   17.4
87       B. tawa      high    ctrl   34.4
88       B. tawa      high    ctrl   25.5
89       B. tawa      high    ctrl   25.0
90       B. tawa      high    ctrl   25.9
91  A. australis       low drought   21.1
92  A. australis       low drought   14.9
93  A. australis       low drought    9.3
94  A. australis       low drought   18.9
95  A. australis       low drought   22.9
96  A. australis       low drought   21.2
97  A. australis       low drought   14.4
98  A. australis       low drought   24.1
99  A. australis       low drought   19.0
100 A. australis       low drought    8.8
101    P. totara       low drought   18.2
102    P. totara       low drought   24.1
103    P. totara       low drought   20.2
104    P. totara       low drought   17.9
105    P. totara       low drought   27.6
106    P. totara       low drought   15.9
107    P. totara       low drought   27.3
108    P. totara       low drought   22.1
109    P. totara       low drought   26.6
110    P. totara       low drought   29.2
111      B. tawa       low drought   32.8
112      B. tawa       low drought   25.9
113      B. tawa       low drought   28.7
114      B. tawa       low drought   34.3
115      B. tawa       low drought   42.5
116      B. tawa       low drought   33.0
117      B. tawa       low drought   27.2
118      B. tawa       low drought   19.9
119      B. tawa       low drought   25.8
120      B. tawa       low drought   31.1
121 A. australis       mid drought   18.7
122 A. australis       mid drought   14.9
123 A. australis       mid drought   14.9
124 A. australis       mid drought   16.2
125 A. australis       mid drought    7.7
126 A. australis       mid drought   11.0
127 A. australis       mid drought    8.2
128 A. australis       mid drought   25.9
129 A. australis       mid drought   21.3
130 A. australis       mid drought    1.7
131    P. totara       mid drought   12.1
132    P. totara       mid drought   19.9
133    P. totara       mid drought   12.8
134    P. totara       mid drought   28.1
135    P. totara       mid drought   19.6
136    P. totara       mid drought   19.2
137    P. totara       mid drought   15.7
138    P. totara       mid drought   25.3
139    P. totara       mid drought   12.5
140    P. totara       mid drought   23.6
141      B. tawa       mid drought   20.4
142      B. tawa       mid drought   24.5
143      B. tawa       mid drought   22.3
144      B. tawa       mid drought   24.6
145      B. tawa       mid drought   22.0
146      B. tawa       mid drought   18.9
147      B. tawa       mid drought   17.9
148      B. tawa       mid drought   23.0
149      B. tawa       mid drought   24.8
150      B. tawa       mid drought   23.7
151 A. australis      high drought    3.4
152 A. australis      high drought   11.9
153 A. australis      high drought    7.9
154 A. australis      high drought    5.3
155 A. australis      high drought    6.1
156 A. australis      high drought    7.1
157 A. australis      high drought    7.4
158 A. australis      high drought    8.2
159 A. australis      high drought    4.3
160 A. australis      high drought    0.6
161    P. totara      high drought   14.6
162    P. totara      high drought   14.4
163    P. totara      high drought    9.5
164    P. totara      high drought    9.5
165    P. totara      high drought   19.5
166    P. totara      high drought    4.3
167    P. totara      high drought    9.2
168    P. totara      high drought   13.5
169    P. totara      high drought   14.3
170    P. totara      high drought   20.6
171      B. tawa      high drought   19.2
172      B. tawa      high drought   19.8
173      B. tawa      high drought   15.5
174      B. tawa      high drought   18.4
175      B. tawa      high drought   16.1
176      B. tawa      high drought   18.9
177      B. tawa      high drought   23.1
178      B. tawa      high drought   20.0
179      B. tawa      high drought    8.7
180      B. tawa      high drought   25.4
> #Packages
> library(ggplot2)
> library(plyr)
> library(reshape2)
> library(dplyr)
> 
> #Elevations
> lowh = drought[drought$elevation %in% c("low"), ]
> midh = drought[drought$elevation %in% c("mid"), ]
> highh = drought[drought$elevation %in% c("high"), ]
> 
> 
> #Se function
> se <- function(x, na.rm = FALSE) { 
+   if (na.rm) { 
+     sqrt(var(x, na.rm = T)/length(na.omit(x))) 
+   } else { 
+     if (any(is.na(sqrt(var(x)/length(x))))) stop("There are NAs in the data!")
+     sqrt(var(x)/length(x))
+   }
+ }
> dat1 <- group_by(.data = lowh, treat, spec) %>%
+   summarise(height_aver = mean(height, na.rm = T),
+             se.pos = mean(height, na.rm = T) + se(height, na.rm = T),
+             se.neg = mean(height, na.rm = T) - se(height, na.rm = T))
> dat1 <- dat1[order(dat1$spec), ]
> dat1
# A tibble: 6 x 5
# Groups:   treat [2]
    treat         spec height_aver   se.pos   se.neg
   <fctr>       <fctr>       <dbl>    <dbl>    <dbl>
1    ctrl A. australis       26.63 27.73956 25.52044
2 drought A. australis       17.46 19.16901 15.75099
3    ctrl      B. tawa       40.23 41.22029 39.23971
4 drought      B. tawa       30.12 32.05975 28.18025
5    ctrl    P. totara       31.08 32.68864 29.47136
6 drought    P. totara       22.91 24.40179 21.41821
> 
> wide <- acast(dat1, treat ~ spec, value.var = "height_aver")
> 
> ####Actual plot####
> low <- ggplot(wide, aes(x = spec, y = height, fill = treat))
Error: ggplot2 doesn't know how to deal with data of class matrix
> 
> cleanup = theme(panel.grid.major = element_blank(), panel.grid.minor = element_blank(), panel.background = element_blank(), axis.line = element_line(color = "black"))
> 
> p1= (low + cleanup + coord_cartesian(ylim = c(0, 35)) 
+      + geom_bar(stat = "identity", position = "dodge") 
+      + theme(axis.text.x = element_text(angle = 45, hjust = 1)) 
+      + xlab("Species") 
+      + ylab("Seedling height (cm)") 
+      + scale_fill_manual(values = c("#009933", "#FFcc66"), name = "Treatment") 
+      + geom_errorbar(aes(ymin=lowh$height-se, ymax=lowh$height+se), position = "dodge"))
> p1
Error: Aesthetics must be either length 1 or the same as the data (6): x, y, fill
> dev.off()

0 个答案:

没有答案