上下文
我正在使用HDI群集上的Rstudio服务器在大型数据集上工作得更快但我遇到了问题。
当我尝试安装软件包时，我收到此错误（使用软件包sparklyr的示例）
> install.packages("sparklyr", repos = "http://cran.us.r-project.org")
Warning in install.packages :
unable to access index for repository https://mran.microsoft.com/snapshot/2017-03-15/src/contrib:
Line starting '<head><title>Documen ...' is malformed!
Installing package into ‘/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
also installing the dependencies ‘httpuv’, ‘jsonlite’, ‘shiny’
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0100 417k 100 417k 0 0 2838k 0 --:--:-- --:--:-- --:--:-- 2840k
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0100 1071k 100 1071k 0 0 6323k 0 --:--:-- --:--:-- --:--:-- 6337k
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0100 2276k 100 2276k 0 0 10.6M 0 --:--:-- --:--:-- --:--:-- 10.6M
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 13 2637k 13 360k 0 0 2422k 0 0:00:01 --:--:-- 0:00:01 2417k100 2637k 100 2637k 0 0 12.1M 0 --:--:-- --:--:-- --:--:-- 12.0M
* installing *source* package ‘httpuv’ ...
** package ‘httpuv’ successfully unpacked and MD5 sums checked
** libs
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c RcppExports.cpp -o RcppExports.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'RcppExports.o' failed
make: [RcppExports.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c filedatasource-unix.cpp -o filedatasource-unix.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'filedatasource-unix.o' failed
make: [filedatasource-unix.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c filedatasource-win.cpp -o filedatasource-win.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'filedatasource-win.o' failed
make: [filedatasource-win.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c http.cpp -o http.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'http.o' failed
make: [http.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c httpuv.cpp -o httpuv.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'httpuv.o' failed
make: [httpuv.o] Error 127 (ignored)
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c md5.c -o md5.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c register.c -o register.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c set_invalid_parameter.c -o set_invalid_parameter.o
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c uvutil.cpp -o uvutil.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'uvutil.o' failed
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c websockets-base.cpp -o websockets-base.o
make: [uvutil.o] Error 127 (ignored)
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'websockets-base.o' failed
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c websockets-hixie76.cpp -o websockets-hixie76.o
make: [websockets-base.o] Error 127 (ignored)
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'websockets-hixie76.o' failed
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c websockets-hybi03.cpp -o websockets-hybi03.o
make: [websockets-hixie76.o] Error 127 (ignored)
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'websockets-hybi03.o' failed
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c websockets-ietf.cpp -o websockets-ietf.o
make: [websockets-hybi03.o] Error 127 (ignored)
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'websockets-ietf.o' failed
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c websockets.cpp -o websockets.o
make: [websockets-ietf.o] Error 127 (ignored)
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:141: recipe for target 'websockets.o' failed
make --directory=libuv \
CC="gcc -std=gnu99" CFLAGS="-DU_STATIC_IMPLEMENTATION -O2 -g -fpic" AR="ar" RANLIB="ranlib" \
HAVE_DTRACE=0 \
libuv.a
make: [websockets.o] Error 127 (ignored)
make[1]: Entering directory '/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv'
mkdir -p src/unix
touch src/unix/.buildstamp
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/async.c -o src/unix/async.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/core.c -o src/unix/core.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/dl.c -o src/unix/dl.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/error.c -o src/unix/error.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/fs.c -o src/unix/fs.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/getaddrinfo.c -o src/unix/getaddrinfo.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/loop.c -o src/unix/loop.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/loop-watcher.c -o src/unix/loop-watcher.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/pipe.c -o src/unix/pipe.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/poll.c -o src/unix/poll.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/process.c -o src/unix/process.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/signal.c -o src/unix/signal.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/stream.c -o src/unix/stream.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/tcp.c -o src/unix/tcp.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/thread.c -o src/unix/thread.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/threadpool.c -o src/unix/threadpool.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/timer.c -o src/unix/timer.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/tty.c -o src/unix/tty.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/udp.c -o src/unix/udp.o
mkdir -p src
touch src/.buildstamp
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/fs-poll.c -o src/fs-poll.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/uv-common.c -o src/uv-common.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/inet.c -o src/inet.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/version.c -o src/version.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/linux-core.c -o src/unix/linux-core.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/linux-inotify.c -o src/unix/linux-inotify.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/linux-syscalls.c -o src/unix/linux-syscalls.o
gcc -std=gnu99 --std=c89 -pedantic -Wall -Wextra -Wno-unused-parameter -D_GNU_SOURCE -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/include/uv-private -I/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv/src -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c src/unix/proctitle.c -o src/unix/proctitle.o
ar rcs libuv.a src/unix/async.o src/unix/core.o src/unix/dl.o src/unix/error.o src/unix/fs.o src/unix/getaddrinfo.o src/unix/loop.o src/unix/loop-watcher.o src/unix/pipe.o src/unix/poll.o src/unix/process.o src/unix/signal.o src/unix/stream.o src/unix/tcp.o src/unix/thread.o src/unix/threadpool.o src/unix/timer.o src/unix/tty.o src/unix/udp.o src/fs-poll.o src/uv-common.o src/inet.o src/version.o src/unix/linux-core.o src/unix/linux-inotify.o src/unix/linux-syscalls.o src/unix/proctitle.o
make[1]: Leaving directory '/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/libuv'
make --directory=http-parser \
CC="gcc -std=gnu99" CFLAGS="-DU_STATIC_IMPLEMENTATION -O2 -g -fpic" AR="ar" RANLIB="ranlib" \
http_parser.o
make[1]: Entering directory '/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/http-parser'
gcc -std=gnu99 -I. -DHTTP_PARSER_STRICT=0 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -O3 -c http_parser.c
make[1]: Leaving directory '/tmp/RtmpPak08O/R.INSTALL692e63c7b08a/httpuv/src/http-parser'
(cd sha1 && gcc -std=gnu99 -DU_STATIC_IMPLEMENTATION -O2 -g -fpic -c sha1.c -o sha1.o)
(cd base64 && -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./libuv/include -I./http-parser -I./sha1 -I./base64 -DU_STATIC_IMPLEMENTATION -I"/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -c base64.cpp -o base64.o)
sh: -I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
Makevars:47: recipe for target 'base64.o' failed
make: *** [base64.o] Error 127
ERROR: compilation failed for package ‘httpuv’
* removing ‘/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/httpuv’
Warning in install.packages :
installation of package ‘httpuv’ had non-zero exit status
* installing *source* package ‘jsonlite’ ...
** package ‘jsonlite’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c base64.c -o base64.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c collapse_array.c -o collapse_array.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c collapse_object.c -o collapse_object.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c collapse_pretty.c -o collapse_pretty.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c escape_chars.c -o escape_chars.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c integer64_to_na.c -o integer64_to_na.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c is_datelist.c -o is_datelist.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c is_recordlist.c -o is_recordlist.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c is_scalarlist.c -o is_scalarlist.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c modp_numtoa.c -o modp_numtoa.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c null_to_na.c -o null_to_na.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c num_to_char.c -o num_to_char.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c parse.c -o parse.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c prettify.c -o prettify.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c push_parser.c -o push_parser.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c r-base64.c -o r-base64.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c register.c -o register.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c row_collapse.c -o row_collapse.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c transpose_list.c -o transpose_list.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c validate.c -o validate.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c yajl/yajl.c -o yajl/yajl.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -Iyajl/api -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o
ar rcs libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o
gcc -std=gnu99 -shared -L/usr/lib64/microsoft-r/3.3/lib64/R/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -L. -lstatyajl -L/usr/lib64/microsoft-r/3.3/lib64/R/lib -lR
installing to /home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/jsonlite/libs
** R
** inst
** preparing package for lazy loading
Error in unloadNamespace(pkg_name) :
namespace ‘jsonlite’ is imported by ‘RevoScaleR’, ‘MicrosoftML’, ‘CompatibilityAPI’ so cannot be unloaded
* removing ‘/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/jsonlite’
Warning in install.packages :
installation of package ‘jsonlite’ had non-zero exit status
ERROR: dependency ‘httpuv’ is not available for package ‘shiny’
* removing ‘/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/shiny’
Warning in install.packages :
installation of package ‘shiny’ had non-zero exit status
ERROR: dependency ‘shiny’ is not available for package ‘sparklyr’
* removing ‘/home/sshuser4/R/x86_64-pc-linux-gnu-library/3.3/sparklyr’
Warning in install.packages :
installation of package ‘sparklyr’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpgVHekU/downloaded_packages’
我不知道为什么需要这么长时间以及为什么它不起作用。 要解决这个问题，我必须首先安装curl和httr然后使用devtools install.version并且可以使用哪个版本。有关信息，我正在使用安装在Azure HDI群集上的Rstudio服务器3.3。
更新
我可以安装一些软件包，但有些软件包仍然无法安装。我有时会得到这样的东西：
In file included from /home/sshuser/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h:70:0,
from /home/sshuser/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h:27,
from XlsxWorkBook.cpp:1:
/home/sshuser/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp/utils/tinyformat.h:136:0: warning: "TINYFORMAT_NO_VARIADIC_TEMPLATES" redefined
#define TINYFORMAT_NO_VARIADIC_TEMPLATES
^
<command-line>:0:0: note: this is the location of the previous definition
有时我得到这样的东西：
ERROR: dependencies ‘RJDBC’, ‘rJava’ are not available for package ‘RH2’
* removing ‘/home/sshuser/R/x86_64-pc-linux-gnu-library/3.3/RH2’