问题描述
我想向在线BLAST website发送一个http post请求。我检查了POST请求并看到了这个:
Request URL:https://p3.theseed.org/services/homology_service
Referrer Policy:no-referrer-when-downgrade
Request Headers
Provisional headers are shown
Accept:application/json
Content-Type:application/x-www-form-urlencoded
Origin:https://www.patricbrc.org
Referer:https://www.patricbrc.org/
User-Agent:Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/61.0.3163.100 Safari/537.36
X-Requested-With:XMLHttpRequest
Form Data
{"method":"HomologyService.blast_fasta_to_database","params":[">test
ATAGCTAACAGCATC","blastn","ref.fna","10",50,0],"version":"1.1","id":"27057295081137034"}:
现在我想为几个序列执行此操作(因此替换ATAGCTAACAGCATC
)。我熟悉发送这些类型的请求,但我现在不知道如何:
form data
,以便我可以使用Requests id
做些什么,因为我不知道这一点,因为它对每个BLAST作业都是独一无二的。 代码
import requests as r
blast_url = 'https://p3.theseed.org/services/homology_service'
data = {"method":"HomologyService.blast_fasta_to_database","params":["%3Etest%0ATAGCTAACAGCATC","blastp","ref.faa","10",'50','0'],"version":"1.1"}
headers = {
'Host': 'p3.theseed.org',
'Accept': 'application/json',
'Accept-Language': 'en-US,en;q=0.5',
'Referer': 'https://www.patricbrc.org/app/BLAST',
'Content-Type': 'application/rqlquery+x-www-form-urlencoded',
'X-Requested-With' : 'XMLHttpRequest'
}
res = r.post(blast_url, headers = headers, params = data).text
print(res)
我没有填写id
,但这似乎不是问题,因为在错误消息中填写了ID(所以它似乎自动生成了?)
这是我得到的错误:
{"id":"15004153692662703","error":{"name":"JSONRPCError","code":-32700,"message":"You did not supply any JSON to parse in the POST body."},"version":"1.1"}
显然,表单数据的格式错误会产生这些问题,但我不知道应该如何格式化(如果这样可以解决问题)
答案 0 :(得分:1)
您输入的json字符串格式错误,因此远程api期望数据为json格式。你需要做
import json
data = json.dumps(data)
res = r.post(blast_url, headers = headers, data = data).text
并将标题的内容类型设为:
headers['Content-Type'] = 'application/json'
答案 1 :(得分:0)
您应该将此行res = r.post(blast_url, headers = headers, params = data).text
更改为res = r.post(blast_url, headers = headers, data = data).text
此外,在使用某些工具之前,请阅读此工具的文档,例如,dosc可查找您可以找到的请求here