我也是Fhir的Hapi Fhir的新手。我试图在 Hapi Fhir上导入 Snomed-CT / US 版本。我使用客户端执行此操作，这样：
运行服务器：
java -jar hapi-fhir-cli.jar run-server
上传snomed-ct
java -jar hapi-fhir-cli.jar upload-terminology -d SnomedCT_RF2Release_INT_20160131.zip -t http://localhost:8080/baseDstu3 -u http://snomed.info/sct
代码系统已成功上传：
{
"resourceType": "Bundle",
"id": "948f4c4b-2e28-475b-a629-3d5122d5e103",
"meta": {
"lastUpdated": "2017-09-11T11:47:56.941+02:00"
},
"type": "searchset",
"total": 1,
"link": [
{
"relation": "self",
"url": "http://localhost:8080/baseDstu3/CodeSystem?_pretty=true"
}
],
"entry": [
{
"fullUrl": "http://localhost:8080/baseDstu3/CodeSystem/1",
"resource": {
"resourceType": "CodeSystem",
"id": "1",
"meta": {
"versionId": "1",
"lastUpdated": "2017-09-11T10:25:43.282+02:00"
},
"url": "http://snomed.info/sct",
"content": "not-present"
},
"search": {
"mode": "match"
}
}
]
}
但我无法找到代码！这是我的ValueSet：
{
"resourceType": "Bundle",
"id": "37fff235-1229-4491-a3ab-9bdba2333d57",
"meta": {
"lastUpdated": "2017-09-11T11:49:35.553+02:00"
},
"type": "searchset",
"total": 0,
"link": [
{
"relation": "self",
"url": "http://localhost:8080/baseDstu3/ValueSet?_pretty=true"
}
]
}
这是从我的日志中提取的：
/hapi-fhir-cli/hapi-fhir-cli-app/target$ java -jar hapi-fhir-cli.jar run-server
------------------------------------------------------------
HAPI FHIR 3.0.0-SNAPSHOT - Command Line Tool
------------------------------------------------------------
Max configured JVM memory (Xmx): 1.7GB
Detected Java version: 1.8.0_144
------------------------------------------------------------
10:20:49 INFO ca.uhn.fhir.context.FhirContext - Creating new FHIR context for FHIR version [DSTU3]
10:20:49 INFO ca.uhn.fhir.cli.RunServerCommand - Preparing HAPI FHIR JPA server on port 8080
10:20:51 INFO ca.uhn.fhir.cli.RunServerCommand - Starting HAPI FHIR JPA server in DSTU3 mode
10:21:22 INFO ca.uhn.fhir.context.FhirContext - Creating new FHIR context for FHIR version [DSTU3]
10:21:46 WARN o.h.e.jdbc.spi.SqlExceptionHelper - SQL Warning Code: 10000, SQLState: 01J01
10:21:46 WARN o.h.e.jdbc.spi.SqlExceptionHelper - Database 'directory:target/jpaserver_derby_files' not created, connection made to existing database instead.
10:21:46 WARN o.h.e.jdbc.spi.SqlExceptionHelper - SQL Warning Code: 10000, SQLState: 01J01
10:21:46 WARN o.h.e.jdbc.spi.SqlExceptionHelper - Database 'directory:target/jpaserver_derby_files' not created, connection made to existing database instead.
10:21:46 WARN o.h.e.jdbc.spi.SqlExceptionHelper - SQL Warning Code: 10000, SQLState: 01J01
10:21:46 WARN o.h.e.jdbc.spi.SqlExceptionHelper - Database 'directory:target/jpaserver_derby_files' not created, connection made to existing database instead.
10:21:46 WARN o.h.e.jdbc.spi.SqlExceptionHelper - SQL Warning Code: 10000, SQLState: 01J01
10:21:46 WARN o.h.e.jdbc.spi.SqlExceptionHelper - Database 'directory:target/jpaserver_derby_files' not created, connection made to existing database instead.
10:21:47 INFO ca.uhn.fhir.cli.RunServerCommand - Server started on port 8080
10:21:47 INFO ca.uhn.fhir.cli.RunServerCommand - Web Testing UI : http://localhost:8080/
10:21:47 INFO ca.uhn.fhir.cli.RunServerCommand - Server Base URL: http://localhost:8080/baseDstu3/
10:22:09 INFO ca.uhn.fhir.context.FhirContext - Creating new FHIR context for FHIR version [DSTU3]
10:22:10 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Initial query result returned in 95ms for query 93e6a047-b93f-4e6c-8ee9-03b51d08bd45
10:22:10 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Query found 0 matches in 96ms for query 93e6a047-b93f-4e6c-8ee9-03b51d08bd45
10:22:10 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - The include pids are empty
10:22:10 INFO c.u.f.j.d.d.SearchParamRegistryDstu3 - Refreshed search parameter cache in 108ms
10:22:10 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Initial query result returned in 67ms for query 60cc4f7c-887c-4fe6-9ca5-32f24017f91a
10:22:10 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Query found 0 matches in 67ms for query 60cc4f7c-887c-4fe6-9ca5-32f24017f91a
10:22:10 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - The include pids are empty
10:22:10 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Initial query result returned in 2ms for query a1ff7c92-b273-4ef4-8898-870c0377a161
10:22:10 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Query found 0 matches in 3ms for query a1ff7c92-b273-4ef4-8898-870c0377a161
10:22:10 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - The include pids are empty
10:22:10 INFO c.uhn.fhir.rest.server.RestfulServer - Initializing HAPI FHIR restful server running in DSTU3 mode
10:22:10 INFO c.uhn.fhir.rest.server.RestfulServer - Added 117 resource provider(s). Total 117
10:22:10 INFO c.uhn.fhir.rest.server.RestfulServer - Scanning type for RESTful methods: class ca.uhn.fhir.jpa.rp.dstu3.AccountResourceProvider
....
10:22:11 INFO c.uhn.fhir.rest.server.RestfulServer - Scanning type for RESTful methods: class ca.uhn.fhir.jpa.rp.dstu3.TestScriptResourceProvider
10:22:11 INFO c.uhn.fhir.rest.server.RestfulServer - Scanning type for RESTful methods: class ca.uhn.fhir.jpa.rp.dstu3.ValueSetResourceProvider
10:22:11 INFO c.uhn.fhir.rest.server.RestfulServer - Scanning type for RESTful methods: class ca.uhn.fhir.jpa.rp.dstu3.VisionPrescriptionResourceProvider
10:22:11 INFO c.uhn.fhir.rest.server.RestfulServer - Added 2 plain provider(s). Total 2
10:22:11 INFO c.uhn.fhir.rest.server.RestfulServer - Scanning type for RESTful methods: class ca.uhn.fhir.jpa.provider.dstu3.JpaSystemProviderDstu3
10:22:11 INFO c.uhn.fhir.rest.server.RestfulServer - Scanning type for RESTful methods: class ca.uhn.fhir.jpa.provider.dstu3.TerminologyUploaderProviderDstu3
10:22:11 INFO c.uhn.fhir.rest.server.RestfulServer - Scanning type for RESTful methods: class org.hl7.fhir.dstu3.hapi.rest.server.ServerProfileProvider
10:22:11 INFO c.uhn.fhir.rest.server.RestfulServer - Scanning type for RESTful methods: class ca.uhn.fhir.jpa.provider.dstu3.JpaConformanceProviderDstu3
10:22:11 INFO c.uhn.fhir.rest.server.RestfulServer - Scanning type for RESTful methods: class ca.uhn.fhir.rest.server.PageProvider
10:22:11 INFO c.uhn.fhir.rest.server.RestfulServer - A FHIR has been lit on this server
10:22:12 INFO c.u.f.n.BaseThymeleafNarrativeGenerator - Initializing narrative generator
10:22:13 INFO ca.uhn.fhir.to.Controller - Request(GET //localhost:8080/)@70976daf
10:22:20 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Initial query result returned in 3ms for query fad4433e-825c-41ae-b22e-9bbb0a1624a0
10:22:20 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Query found 0 matches in 3ms for query fad4433e-825c-41ae-b22e-9bbb0a1624a0
10:22:20 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - The include pids are empty
...
10:23:50 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Initial query result returned in 3ms for query f0b25957-c166-4b23-be6e-0d06274da565
10:23:50 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Query found 0 matches in 3ms for query f0b25957-c166-4b23-be6e-0d06274da565
10:23:50 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - The include pids are empty
10:23:52 INFO c.u.f.jpa.term.TerminologyLoaderSvc - Beginning SNOMED CT processing
10:23:59 INFO c.u.f.jpa.term.TerminologyLoaderSvc - Processing file SnomedCT_RF2Release_INT_20160131/Full/Terminology/sct2_Concept_Full_INT_20160131.txt
10:23:59 INFO c.u.f.jpa.term.TerminologyLoaderSvc - * Processed 1 records in SnomedCT_RF2Release_INT_20160131/Full/Terminology/sct2_Concept_Full_INT_20160131.txt
10:23:59 INFO c.u.f.jpa.term.TerminologyLoaderSvc - * Processed 100000 records in SnomedCT_RF2Release_INT_20160131/Full/Terminology/sct2_Concept_Full_INT_20160131.txt
10:24:00 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Initial query result returned in 2ms for query 6393e886-2878-4c3a-b50a-a19139c01dd4
10:24:00 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Query found 0 matches in 9ms for query 6393e886-2878-4c3a-b50a-a19139c01dd4
10:24:00 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - The include pids are empty
...
10:25:29 INFO c.u.f.jpa.term.TerminologyLoaderSvc - * Processed 4700000 records in SnomedCT_RF2Release_INT_20160131/Full/Terminology/sct2_Relationship_Full_INT_20160131.txt
10:25:30 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Initial query result returned in 2ms for query df9f1505-e381-4eda-a04b-934293c54721
10:25:30 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Query found 0 matches in 2ms for query df9f1505-e381-4eda-a04b-934293c54721
10:25:30 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - The include pids are empty
10:25:40 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Initial query result returned in 2ms for query 1961cfd8-b2b0-4626-a397-6a7b925e4547
10:25:40 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Query found 0 matches in 2ms for query 1961cfd8-b2b0-4626-a397-6a7b925e4547
10:25:40 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - The include pids are empty
10:25:41 INFO c.u.f.jpa.term.TerminologyLoaderSvc - Looking for root codes
10:25:41 INFO c.u.f.jpa.term.TerminologyLoaderSvc - Done loading SNOMED CT files - 3 root codes, 319446 total codes
10:25:41 INFO c.u.f.jpa.term.TerminologyLoaderSvc - * Scanning for circular refs - have scanned 0 / 3 codes (0.0%)
...
10:25:43 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Initial query result returned in 81ms for query 9aa7c541-8dfa-4176-8621-046c7ba886e4
10:25:43 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Query found 0 matches in 82ms for query 9aa7c541-8dfa-4176-8621-046c7ba886e4
10:25:46 INFO ca.uhn.fhir.jpa.dao.BaseHapiFhirDao - Saving history entry CodeSystem/1/_history/1
10:25:46 INFO c.u.f.j.dao.BaseHapiFhirResourceDao - Successfully created resource "CodeSystem/1/_history/1" in 3.314ms
10:25:46 INFO c.u.f.j.term.HapiTerminologySvcDstu3 - CodeSystem resource has ID: CodeSystem/1
10:25:46 INFO c.u.f.j.term.BaseHapiTerminologySvc - Storing code system
10:25:46 INFO c.u.f.j.term.BaseHapiTerminologySvc - Deleting old code system versions
10:25:46 INFO c.u.f.j.term.BaseHapiTerminologySvc - Flushing...
10:25:46 INFO c.u.f.j.term.BaseHapiTerminologySvc - Done flushing
10:25:47 INFO c.u.f.j.term.BaseHapiTerminologySvc - Validating all codes in CodeSystem for storage (this can take some time for large sets)
10:25:47 INFO c.u.f.j.term.BaseHapiTerminologySvc - Have validated 1000 concepts
...
10:25:49 INFO c.u.f.j.term.BaseHapiTerminologySvc - Have validated 319000 concepts
10:25:49 INFO c.u.f.j.term.BaseHapiTerminologySvc - Saving version containing 319446 concepts
10:25:49 INFO c.u.f.j.term.BaseHapiTerminologySvc - Saving code system
10:25:50 INFO c.u.f.j.term.BaseHapiTerminologySvc - Setting codesystemversion on 319446 concepts...
10:25:50 INFO c.u.f.j.term.BaseHapiTerminologySvc - Saving 319446 concepts...
10:25:50 INFO c.u.f.j.term.BaseHapiTerminologySvc - Have processed 1/319446 concepts (0%)
10:25:56 INFO c.u.f.j.term.BaseHapiTerminologySvc - Have processed 10000/319446 concepts (3%)
...
10:25:56 INFO c.u.f.j.term.BaseHapiTerminologySvc - Have processed 310000/319446 concepts (97%)
10:25:56 INFO c.u.f.j.term.BaseHapiTerminologySvc - Done saving concepts, flushing to database
10:25:57 INFO c.u.f.j.term.BaseHapiTerminologySvc - Done deleting old code system versions
10:25:57 INFO c.u.f.j.term.BaseHapiTerminologySvc - Note that some concept saving was deferred - still have 317446 concepts and 472410 relationships
10:25:57 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Initial query result returned in 7003ms for query a94cc0f2-b99e-4cce-9ba1-16b0b3ce70bb
10:25:57 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Query found 0 matches in 7003ms for query a94cc0f2-b99e-4cce-9ba1-16b0b3ce70bb
10:25:57 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - The include pids are empty
10:26:00 INFO c.u.f.j.term.BaseHapiTerminologySvc - Saving 2000 deferred concepts...
10:26:04 INFO c.u.f.j.term.BaseHapiTerminologySvc - Saved 2000 deferred concepts (315645 codes remain and 472410 relationships remain) in 3936ms (1ms / code)
...
10:26:25 INFO c.u.f.j.term.BaseHapiTerminologySvc - Saving 2000 deferred concepts...
10:26:26 INFO c.u.f.j.term.BaseHapiTerminologySvc - Saved 2000 deferred concepts (305504 codes remain and 472410 relationships remain) in 852ms (0ms / code)
10:26:27 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Initial query result returned in 1ms for query c71cfc5b-02a4-4f16-a47f-15a947611b71
10:26:27 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - Query found 0 matches in 2ms for query c71cfc5b-02a4-4f16-a47f-15a947611b71
10:26:27 INFO ca.uhn.fhir.jpa.dao.SearchBuilder - The include pids are empty
更新 好的，我在数据库表TRM_CONCEPT和TRM_CONCEPT_LINK上看到了这些概念。但是，有没有办法查询这些概念？