我正在尝试基于BioMed Central LaTeX模板（bmc-article.tex）创建R-Markdown模板。
这里可以下载bmc模板文件，不用说，它们工作得很好：https://www.biomedcentral.com/authors/tex
特别是，作者，地址和注释定义起作用并产生预期的结果。
我已将bmc-article.tex文件中的示例作者，地址和注释定义替换为将其用作tex模板。我还删除了该文件中的大部分示例内容。
bmc-article.tex中的定义示例，我已替换为：
$for(author)$
\author[%
addressref={$author.addressref$}, %
$if(author.corref)$corref={$author.corref$}, $endif$ %
$if(author.noteref)$noteref={$author.noteref$}, $endif$ %
email={$author.email$} %
]{\inits{$author.inits$}\fnm{$author.fnm$} \snm{$author.snm$}}
$endfor$
$for(address)$
\address[id=$address.id$]{ %
$if(address.orgname)$ \orgname{$address.orgname$}, $endif$ %
$if(address.street)$ \street{$address.street$}, $endif$ %
$if(address.postcode)$ \postcode{$address.postcode$}, $endif$ %
$if(address.city)$ \city{$address.city$}, $endif$ %
$if(address.cny)$ \cny{$address.cny$}$endif$ %
}
$endfor$
\begin{artnotes}
$for(notes)$
\note[id=$notes.id$]{$notes.text$} % note, connected to author
$endfor$
\end{artnotes}
当＆＃39;编织Rmd文件时，它（据我所知）转换为meningful tex，并且我一遍又一遍地查看生成的tex文件，查找tex错误，但没有找到。
E.g：
author:
- fnm: "Soren"
snm: "ONeill"
inits: "S"
addressref: "aff1"
email: "sorens mail"
corref: "aff1"
noteref: "n1"
..变为：
\author[%
addressref={aff1}, %
corref={aff1}, %
noteref={n1}, %
email={sorens mail} %
]{\inits{S}\fnm{Soren} \snm{ONeill}}
但是生成的pdf文件不正确。将姓名与地址相关联的上标数字显示为问号，文章末尾的作者详细信息完全丢失。
我没有看到pandoc（基于我的Rmd文件）创建的tex文件与原始bmx模板tex文件之间存在任何显着差异。
我知道以下内容相当冗长。
Rmd示例文件
title: "Template testing"
author:
- fnm: "Soren"
snm: "ONeill"
inits: "S"
addressref: "aff1"
email: "sorens mail"
corref: "aff1"
noteref: "n1"
- fnm: "Lotte"
snm: "ONeill"
inits: "L"
addressref: "aff2"
email: "lottes mail"
address:
- id: "aff1"
orgname: "University of Southern Denmark"
street: "Campusvej 55"
postcode: "DK 5500"
city: "Odense M"
cny: "Denmark"
- id: "aff2"
orgname: "University of Southern Denmark"
street: "Campusvej 55"
postcode: "DK 5500"
city: "Odense M"
cny: "Denmark"
notes:
- id: "n1"
text: "Equal contributor"
date: "2 jun 2017"
output:
pdf_document:
template: template.tex
keep_tex: TRUE
---
## R Markdown
This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see rmarkdown.rstudio.com.
这是template.tex文件，我从下载的bmc-article.tex文件改编而来
%% BioMed_Central_Tex_Template_v1.06
\documentclass{bmcart}
\usepackage[utf8]{inputenc} %unicode support
\def\includegraphic{}
\def\includegraphics{}
\begin{document}
\begin{frontmatter}
\begin{fmbox}
\dochead{Research}
\title{$title$}
$for(author)$
\author[%
addressref={$author.addressref$}, %
$if(author.corref)$corref={$author.corref$}, $endif$ %
$if(author.noteref)$noteref={$author.noteref$}, $endif$ %
email={$author.email$} %
]{\inits{$author.inits$}\fnm{$author.fnm$} \snm{$author.snm$}}
$endfor$
$for(address)$
\address[id=$address.id$]{ %
$if(address.orgname)$ \orgname{$address.orgname$}, $endif$ %
$if(address.street)$ \street{$address.street$}, $endif$ %
$if(address.postcode)$ \postcode{$address.postcode$}, $endif$ %
$if(address.city)$ \city{$address.city$}, $endif$ %
$if(address.cny)$ \cny{$address.cny$}$endif$ %
}
$endfor$
\begin{artnotes}
$for(notes)$
\note[id=$notes.id$]{$notes.text$} % note, connected to author
$endfor$
\end{artnotes}
\end{fmbox}% comment this for two column layout
\begin{abstractbox}
\begin{abstract} % abstract
\parttitle{First part title} %if any
Text for this section.
\parttitle{Second part title} %if any
Text for this section.
\end{abstract}
\begin{keyword}
\kwd{sample}
\kwd{article}
\kwd{author}
\end{keyword}
\end{abstractbox}
\end{frontmatter}
%$body$
\begin{backmatter}
\section*{Competing interests}
The authors declare that they have no competing interests.
\section*{Author's contributions}
Text for this section \ldots
\section*{Acknowledgements}
Text for this section \ldots
\bibliographystyle{bmc-mathphys} % Style BST file (bmc-mathphys, vancouver, spbasic).
\bibliography{bmc_article} % Bibliography file (usually '*.bib' )
\end{backmatter}
\end{document}
这会生成以下tex文件（我已指示RStudio / pandoc保留tex文件）：
%% BioMed_Central_Tex_Template_v1.06
\documentclass{bmcart}
\usepackage[utf8]{inputenc} %unicode support
\def\includegraphic{}
\def\includegraphics{}
\begin{document}
\begin{frontmatter}
\begin{fmbox}
\dochead{Research}
\title{Template testing}
\author[%
addressref={aff1}, %
corref={aff1}, %
noteref={n1}, %
email={sorens mail} %
]{\inits{S}\fnm{Soren} \snm{ONeill}}
\author[%
addressref={aff2}, %
%
%
email={lottes mail} %
]{\inits{L}\fnm{Lotte} \snm{ONeill}}
\address[id=aff1]{ %
\orgname{University of Southern Denmark}, %
\street{Campusvej 55}, %
\postcode{DK 5500}, %
\city{Odense M}, %
\cny{Denmark} %
}
\address[id=aff2]{ %
\orgname{University of Southern Denmark}, %
\street{Campusvej 55}, %
\postcode{DK 5500}, %
\city{Odense M}, %
\cny{Denmark} %
}
\begin{artnotes}
\note[id=n1]{Equal contributor} % note, connected to author
\end{artnotes}
\end{fmbox}% comment this for two column layout
\begin{abstractbox}
\begin{abstract} % abstract
\parttitle{First part title} %if any
Text for this section.
\parttitle{Second part title} %if any
Text for this section.
\end{abstract}
\begin{keyword}
\kwd{sample}
\kwd{article}
\kwd{author}
\end{keyword}
\end{abstractbox}
\end{frontmatter}
%\subsection{R Markdown}\label{r-markdown}
This is an R Markdown document. Markdown is a simple formatting syntax
for authoring HTML, PDF, and MS Word documents. For more details on
using R Markdown see rmarkdown.rstudio.com.
\begin{backmatter}
\section*{Competing interests}
The authors declare that they have no competing interests.
\section*{Author's contributions}
Text for this section \ldots
\section*{Acknowledgements}
Text for this section \ldots
\bibliographystyle{bmc-mathphys} % Style BST file (bmc-mathphys, vancouver, spbasic).
\bibliography{bmc_article} % Bibliography file (usually '*.bib' )
\end{backmatter}
\end{document}
乳胶日志文件相当冗长（很多关于Unicode char等的东西），但这可能有用
LaTeX Warning: Reference `aff1thanks' on page 1 undefined on input line 19.
LaTeX Font Info: Try loading font information for OMS+cmss on input line 19.
LaTeX Font Info: No file OMScmss.fd. on input line 19.
LaTeX Font Warning: Font shape `OMS/cmss/m/n' undefined
(Font) using `OMS/cmsy/m/n' instead
(Font) for symbol `textdagger' on input line 19.
LaTeX Warning: Reference `aff2thanks' on page 1 undefined on input line 25.
\address@aff1=\toks21
\address@aff2=\toks22
LaTeX Font Info: External font `cmex10' loaded for size
(Font) <7> on input line 46.
LaTeX Font Info: External font `cmex10' loaded for size
(Font) <5> on input line 46.
LaTeX Warning: Reference `aff1thanks' on page 1 undefined on input line 46.
No file template_test_1.bbl.
AED: lastpage setting LastPage
LaTeX Font Warning: Font shape `OT1/cmss/m/it' in size <8> not available
(Font) Font shape `OT1/cmss/m/sl' tried instead on input line 89.
Overfull \hbox (1.0pt too wide) has occurred while \output is active
[]
[]
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}
] (./template_test_1.aux)
LaTeX Font Warning: Size substitutions with differences
(Font) up to 1.0pt have occurred.
LaTeX Font Warning: Some font shapes were not available, defaults substituted.
LaTeX Warning: There were undefined references.
当然，我已经注意到关于＆＃34;参考`aff2thanks＆＃39;＆＃34;的警告，但在原版bmx-article.tex中找不到这样的参考
同样，我知道这很长 - 我为此道歉。我希望有人可以提出建议......