尝试在最新的AWS Linux上安装一堆软件包 - 特别是 scipy 。这是一台大型机器。
安装Python 2.7.12 和 pip 6.1.1来自/usr/lib/python2.7/dist-packages(python 2.7）。 （不升级 pip ，因为它完全搞砸了。）
我已经运行了以下命令。
sudo yum install -y freetype-devel libpng-devel gcc-c++ python27-devel python27-matplotlib atlas-sse3-devel lapack-devel atlas-devel
sudo yum groupinstall 'Development Tools'
sudo yum install atlas-sse3-devel lapack-devel
sudo pip install numpy
sudo pip install pandas
sudo pip install scipy
获取以下错误 -
You are using pip version 6.1.1, however version 9.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
Collecting scipy
Using cached scipy-0.19.0.zip
Installing collected packages: scipy
Running setup.py install for scipy
Complete output from command /usr/bin/python2.7 -c "import setuptools, tokenize;__file__='/tmp/pip-build-YoX5be/scipy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-NjTyw2-record/install-record.txt --single-version-externally-managed --compile:
Note: if you need reliable uninstall behavior, then install
with pip instead of using `setup.py install`:
- `pip install .` (from a git repo or downloaded source
release)
- `pip install scipy` (last SciPy release on PyPI)
lapack_opt_info:
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
libraries lapack_atlas not found in /usr/local/lib64
libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/lib64/atlas-sse3
numpy.distutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC
compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o -L/usr/lib64/atlas-sse3 -lptf77blas -lptcblas -latlas -o _configtest
ATLAS version 3.8.4 built by mockbuild on Sat Jul 7 07:28:07 UTC 2012:
UNAME : Linux gobi-build-31003.sea31.amazon.com 2.6.18-164.el5az00 #1 SMP Tue Sep 15 14:19:07 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux
INSTFLG : -1 0 -a 1
ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_Core2 -DATL_CPUMHZ=2333 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664
F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
CACHEEDGE: 212992
F77 : gfortran, version GNU Fortran (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)
F77FLAGS : -O -g -Wa,--noexecstack -fPIC -m64
SMC : gcc, version gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)
SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse2 -O2 -g -Wa,--noexecstack -fPIC -m64
SKC : gcc, version gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)
SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse2 -O2 -g -Wa,--noexecstack -fPIC -m64
success!
removing: _configtest.c _configtest.o _configtest
Setting PTATLAS=ATLAS
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-sse3']
language = f77
define_macros = [('ATLAS_INFO', '"\\"3.8.4\\""')]
include_dirs = ['/usr/include']
FOUND:
libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-sse3']
language = f77
define_macros = [('ATLAS_INFO', '"\\"3.8.4\\""')]
include_dirs = ['/usr/include']
Running from scipy source directory.
/usr/lib64/python2.7/dist-packages/numpy/distutils/system_info.py:574: UserWarning: Specified path /usr/lib64/python2.7/dist-packages/numpy/__init__.pyc/include/python2.7 is invalid.
warnings.warn('Specified path %s is invalid.' % d)
/usr/lib64/python2.7/dist-packages/numpy/distutils/system_info.py:574: UserWarning: Specified path /usr/local/include/python2.7 is invalid.
warnings.warn('Specified path %s is invalid.' % d)
non-existing path in 'scipy/integrate': 'quadpack.h'
ATLAS version: 3.8.4
Splitting linalg.interpolative Fortran source files
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-sse3']
language = c
define_macros = [('ATLAS_INFO', '"\\"3.8.4\\""')]
include_dirs = ['/usr/include']
FOUND:
libraries = ['ptf77blas', 'ptcblas', 'atlas']
library_dirs = ['/usr/lib64/atlas-sse3']
language = c
define_macros = [('ATLAS_INFO', '"\\"3.8.4\\""')]
include_dirs = ['/usr/include']
non-existing path in 'scipy/sparse': 'sparsetools/sparsetools_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/bsr_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/csc_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/csr_impl.h'
non-existing path in 'scipy/sparse': 'sparsetools/other_impl.h'
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
creating build
creating build/src.linux-x86_64-2.7
creating build/src.linux-x86_64-2.7/scipy
building library "dfftpack" sources
building library "fftpack" sources
building library "mach" sources
building library "quadpack" sources
building library "odepack" sources
building library "dop" sources
building library "fitpack" sources
building library "fwrappers" sources
building library "odrpack" sources
building library "minpack" sources
building library "rootfind" sources
building library "superlu_src" sources
building library "arpack_scipy" sources
building library "sc_c_misc" sources
building library "sc_cephes" sources
building library "sc_mach" sources
building library "sc_amos" sources
building library "sc_cdf" sources
building library "sc_specfun" sources
building library "statlib" sources
building extension "scipy.cluster._vq" sources
building extension "scipy.cluster._hierarchy" sources
building extension "scipy.fftpack._fftpack" sources
creating build/src.linux-x86_64-2.7/scipy/fftpack
creating build/src.linux-x86_64-2.7/scipy/fftpack/src
conv_template:> build/src.linux-x86_64-2.7/scipy/fftpack/src/dct.c
conv_template:> build/src.linux-x86_64-2.7/scipy/fftpack/src/dst.c
f2py options: []
f2py: scipy/fftpack/fftpack.pyf
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-YoX5be/scipy/setup.py", line 416, in <module>
setup_package()
File "/tmp/pip-build-YoX5be/scipy/setup.py", line 412, in setup_package
setup(**metadata)
File "/usr/lib64/python2.7/dist-packages/numpy/distutils/core.py", line 186, in setup
return old_setup(**new_attr)
File "/usr/lib64/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/lib64/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/lib64/python2.7/dist-packages/numpy/distutils/command/install.py", line 57, in run
r = self.setuptools_run()
File "/usr/lib64/python2.7/dist-packages/numpy/distutils/command/install.py", line 31, in setuptools_run
return old_install_mod._install.run(self)
File "/usr/lib64/python2.7/distutils/command/install.py", line 604, in run
self.run_command('build')
File "/usr/lib64/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/lib64/python2.7/dist-packages/numpy/distutils/command/build.py", line 37, in run
old_build.run(self)
File "/usr/lib64/python2.7/distutils/command/build.py", line 127, in run
self.run_command(cmd_name)
File "/usr/lib64/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib64/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/lib64/python2.7/dist-packages/numpy/distutils/command/build_src.py", line 152, in run
self.build_sources()
File "/usr/lib64/python2.7/dist-packages/numpy/distutils/command/build_src.py", line 169, in build_sources
self.build_extension_sources(ext)
File "/usr/lib64/python2.7/dist-packages/numpy/distutils/command/build_src.py", line 334, in build_extension_sources
sources = self.f2py_sources(sources, ext)
File "/usr/lib64/python2.7/dist-packages/numpy/distutils/command/build_src.py", line 571, in f2py_sources
import numpy.f2py
ImportError: No module named f2py
----------------------------------------
Command "/usr/bin/python2.7 -c "import setuptools, tokenize;__file__='/tmp/pip-build-YoX5be/scipy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-NjTyw2-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-YoX5be/scipy
答案 0 :(得分：0)
我不确定原因，但看起来安装numpy时它没有正确安装f2py。据我所知，f2py由numpy维护，看起来它似乎试图在python安装程序中访问numpy.f2py。
尝试sudo yum install -y numpy-f2py，然后pip install scipy。
P.S。如果您正在寻找numpy，scipy，pandas，sklearn和其他有用的库，请考虑安装/使用Anaconda。 Anaconda安装程序可能会以这种或那种方式解决这个问题，因为我从来没有遇到任何问题。