从OWL本体提取特定信息

时间：2017-05-26 13:57:29

标签： java owl

这是昨天我问question的后续行动。我已经成功加载了OWL本体，我想从Java中使用OWL-API从特定的本体条目中提取特定属性。具体来说，我正在使用EFO本体。我想获得许多EFO条目/类的'ICD9_definition_citation'和'MSH_definition_citation'属性。示例类如下所示：

<!-- http://www.ebi.ac.uk/efo/EFO_0000676 -->

<owl:Class rdf:about="&efo;EFO_0000676">
    <rdfs:label rdf:datatype="&xsd;string">psoriasis</rdfs:label>
    <rdfs:subClassOf rdf:resource="&efo;EFO_0000540"/>
    <rdfs:subClassOf rdf:resource="&efo;EFO_1000636"/>
    <rdfs:subClassOf>
        <owl:Restriction>
            <owl:onProperty rdf:resource="&efo;EFO_0000784"/>
            <owl:someValuesFrom rdf:resource="&obo;UBERON_0000014"/>
        </owl:Restriction>
    </rdfs:subClassOf>
    <efo:definition rdf:datatype="&xsd;string">A common genetically determined, chronic, inflammatory skin disease characterized by rounded erythematous, dry, scaling patches. The lesions have a predilection for nails, scalp, genitalia, extensor surfaces, and the lumbosacral region. Accelerated epidermopoiesis is considered to be the fundamental pathologic feature in psoriasis.</efo:definition>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">A common genetically determined, chronic, inflammatory skin disease characterized by rounded erythematous, dry, scaling patches. The lesions have a predilection for nails, scalp, genitalia, extensor surfaces, and the lumbosacral region. Accelerated epidermopoiesis is considered to be the fundamental pathologic feature in psoriasis.[accessedResource: MSH:D011565][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:DOID_definition_citation rdf:datatype="&xsd;string">DOID:8893</efo:DOID_definition_citation>
    <efo:ICD9_definition_citation rdf:datatype="&xsd;string">ICD9:696</efo:ICD9_definition_citation>
    <efo:ICD9_definition_citation rdf:datatype="&xsd;string">ICD9:696.1</efo:ICD9_definition_citation>
    <efo:ICD9_definition_citation rdf:datatype="&xsd;string">ICD9:696.5</efo:ICD9_definition_citation>
    <efo:ICD9_definition_citation rdf:datatype="&xsd;string">ICD9:696.8</efo:ICD9_definition_citation>
    <obo:IAO_0000117 rdf:datatype="&xsd;string">James Malone</obo:IAO_0000117>
    <efo:MSH_definition_citation rdf:datatype="&xsd;string">MSH:D011565</efo:MSH_definition_citation>
    <efo:NCI_Thesaurus_definition_citation rdf:datatype="&xsd;string">NCIt:C3346</efo:NCI_Thesaurus_definition_citation>
    <efo:OMIM_definition_citation rdf:datatype="&xsd;string">OMIM:177900</efo:OMIM_definition_citation>
    <efo:OMIM_definition_citation rdf:datatype="&xsd;string">OMIM:602723</efo:OMIM_definition_citation>
    <efo:OMIM_definition_citation rdf:datatype="&xsd;string">OMIM:605606</efo:OMIM_definition_citation>
    <efo:OMIM_definition_citation rdf:datatype="&xsd;string">OMIM:612599</efo:OMIM_definition_citation>
    <efo:OMIM_definition_citation rdf:datatype="&xsd;string">OMIM:614070</efo:OMIM_definition_citation>
    <efo:alternative_term rdf:datatype="&xsd;string">OTHER PSORIASIS</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">OTHER PSORIASIS[accessedResource: ICD9:696.1][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">Other and unspecified pityriasis</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Other and unspecified pityriasis[accessedResource: ICD9:696.5][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">Other psoriasis and similar disorders</efo:alternative_term>
    <efo:alternative_term rdf:datatype="&xsd;string">Other psoriasis and similar disorders (disorder)</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Other psoriasis and similar disorders (disorder)[accessedResource: SNOMEDCT:200996000][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">Other psoriasis and similar disorders excluding psoriatic arthropathy</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Other psoriasis and similar disorders excluding psoriatic arthropathy[accessedResource: ICD9:696.1][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Other psoriasis and similar disorders[accessedResource: SNOMEDCT:200996000][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">PITYRIASIS NEC &amp; NOS</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">PITYRIASIS NEC &amp; NOS[accessedResource: ICD9:696.5][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">PSORIAS RELATED DIS NEC</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">PSORIAS RELATED DIS NEC[accessedResource: ICD9:696.8][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">PUSTULAR PSORIASIS OF PALMS SOLES</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">PUSTULAR PSORIASIS OF PALMS SOLES[accessedResource: MSH:D011565][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">PUSTULOSIS OF PALMS SOLES</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">PUSTULOSIS OF PALMS SOLES[accessedResource: MSH:D011565][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">Palmoplantaris Pustulosis</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Palmoplantaris Pustulosis[accessedResource: MSH:D011565][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">Psoriases</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Psoriases[accessedResource: MSH:D011565][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">Psoriasis and similar disorders</efo:alternative_term>
    <efo:alternative_term rdf:datatype="&xsd;string">Psoriasis and similar disorders (disorder)</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Psoriasis and similar disorders (disorder)[accessedResource: SNOMEDCT:200955003][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">Psoriasis and similar disorders (navigational concept)</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Psoriasis and similar disorders (navigational concept)[accessedResource: SNOMEDCT:200955003][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">Psoriasis and similar disorders NOS</efo:alternative_term>
    <efo:alternative_term rdf:datatype="&xsd;string">Psoriasis and similar disorders NOS (disorder)</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Psoriasis and similar disorders NOS (disorder)[accessedResource: SNOMEDCT:200997009][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Psoriasis and similar disorders NOS[accessedResource: SNOMEDCT:200997009][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Psoriasis and similar disorders[accessedResource: ICD9:696][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">Pustular Psoriasis of Palms and Soles</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Pustular Psoriasis of Palms and Soles[accessedResource: MSH:D011565][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">Pustulosis Palmaris et Plantaris</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Pustulosis Palmaris et Plantaris[accessedResource: MSH:D011565][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:alternative_term rdf:datatype="&xsd;string">Pustulosis of Palms and Soles</efo:alternative_term>
    <efo:bioportal_provenance rdf:datatype="&xsd;string">Pustulosis of Palms and Soles[accessedResource: MSH:D011565][accessDate: 05-04-2011]</efo:bioportal_provenance>
    <efo:SNOMEDCT_definition_citation rdf:datatype="&xsd;string">SNOMEDCT:9014002</efo:SNOMEDCT_definition_citation>
    <obo:IAO_0000117 rdf:datatype="&xsd;string">Tomasz Adamusiak</obo:IAO_0000117>
    <efo:gwas_trait rdf:datatype="&xsd;string">true</efo:gwas_trait>
</owl:Class>

我尝试了很多东西，获得OWLNamedIndividuals，首先获得所有课程等等......有一种简单的方法可以做到这一点吗？

0 个答案:

没有答案
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