Question

我在64位Ubuntu 16.04上运行R和RStudio，我正在尝试进行群集分析，不过我认为我的错误并不是特定于这个包...但是当我尝试安装包＆＃39;的 ClusterR ＆＃39;来自CRAN，我收到以下错误。

> install.packages("ClusterR")
Installing package into ‘/home/daniel/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
also installing the dependencies ‘tiff’, ‘OpenImageR’, ‘gmp’

trying URL 'https://cran.rstudio.com/src/contrib/tiff_0.1-5.tar.gz'
Content type 'application/x-gzip' length 28925 bytes (28 KB)
==================================================
downloaded 28 KB

trying URL 'https://cran.rstudio.com/src/contrib/OpenImageR_1.0.6.tar.gz'
Content type 'application/x-gzip' length 802641 bytes (783 KB)
==================================================
downloaded 783 KB

trying URL 'https://cran.rstudio.com/src/contrib/gmp_0.5-13.1.tar.gz'
Content type 'application/x-gzip' length 131321 bytes (128 KB)
==================================================
downloaded 128 KB

trying URL 'https://cran.rstudio.com/src/contrib/ClusterR_1.0.5.tar.gz'
Content type 'application/x-gzip' length 916490 bytes (895 KB)
==================================================
downloaded 895 KB

* installing *source* package ‘tiff’ ...
** package ‘tiff’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c common.c -o common.o
In file included from common.c:1:0:
common.h:5:18: fatal error: tiff.h: No such file or directory
compilation terminated.
/usr/lib/R/etc/Makeconf:159: recipe for target 'common.o' failed
make: *** [common.o] Error 1
ERROR: compilation failed for package ‘tiff’
* removing ‘/home/daniel/R/x86_64-pc-linux-gnu-library/3.4/tiff’
Warning in install.packages :
  installation of package ‘tiff’ had non-zero exit status
* installing *source* package ‘gmp’ ...
** package ‘gmp’ successfully unpacked and MD5 sums checked
creating cache ./config.cache
checking for __gmpz_ui_sub in -lgmp... no
configure: error: GNU MP not found, or not 4.1.4 or up, see http://gmplib.org
ERROR: configuration failed for package ‘gmp’
* removing ‘/home/daniel/R/x86_64-pc-linux-gnu-library/3.4/gmp’
Warning in install.packages :
  installation of package ‘gmp’ had non-zero exit status
ERROR: dependency ‘tiff’ is not available for package ‘OpenImageR’
* removing ‘/home/daniel/R/x86_64-pc-linux-gnu-library/3.4/OpenImageR’
Warning in install.packages :
  installation of package ‘OpenImageR’ had non-zero exit status
ERROR: dependencies ‘OpenImageR’, ‘gmp’ are not available for package ‘ClusterR’
* removing ‘/home/daniel/R/x86_64-pc-linux-gnu-library/3.4/ClusterR’
Warning in install.packages :
  installation of package ‘ClusterR’ had non-zero exit status

The downloaded source packages are in
    ‘/tmp/RtmpuIo1WM/downloaded_packages’

事实上，如果我尝试只安装包＆＃39; tiff ＆＃39;我得到了同样的错误，在这里提炼：

Installing package into ‘/home/daniel/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/tiff_0.1-5.tar.gz'
Content type 'application/x-gzip' length 28925 bytes (28 KB)
==================================================
downloaded 28 KB

* installing *source* package ‘tiff’ ...
** package ‘tiff’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c common.c -o common.o
In file included from common.c:1:0:
common.h:5:18: fatal error: tiff.h: No such file or directory
compilation terminated.
/usr/lib/R/etc/Makeconf:159: recipe for target 'common.o' failed
make: *** [common.o] Error 1
ERROR: compilation failed for package ‘tiff’
* removing ‘/home/daniel/R/x86_64-pc-linux-gnu-library/3.4/tiff’
Warning in install.packages :
  installation of package ‘tiff’ had non-zero exit status

The downloaded source packages are in
    ‘/tmp/RtmpuIo1WM/downloaded_packages’

我仍然有点像R和Ubuntu的编码新手，所以我不确定我在这里失踪了什么？我有一种感觉，我在Ubuntu中缺少一些依赖/库，这是在R中以这种方式从源代码安装所需要的，但我不确定是什么？我从源代码安装其他软件包时遇到了麻烦，包括其他包含 ClusterR ＆＃39; 的软件包。

我安装了GCC Fortran，终端代码列在这里：

daniel@fulgur-desktop:~$ gcc --version
gcc (Ubuntu 5.4.0-6ubuntu1~16.04.4) 5.4.0 20160609
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Answer 1

R软件包通常具有通常无法通过R安装的外部系统依赖项。如果您检查tiff软件包的CRAN package docs，则提及tiff和jpeg库是必需的。无论如何，浏览Ubuntu包列表并搜索tiff会导致libtiff5-dev包。运行

sudo apt-get install libtiff5-dev

你应该没事。首先，为了安装R软件包的系统要求，通常需要在最后安装-dev版本。

Answer 2

对于Mac，您可以使用brew：

public class Table2
{
    [DatabaseGenerated(DatabaseGeneratedOption.Identity)]
    public int Id {get; set;}

    public string RelatedTableName {get; set;}
    public int? Table1RowId {get; set;}
    public int? Table2RowId {get; set;}
    // ...
    public int? Table10RowId {get; set;}
}

然后在R中安装软件包映像时出现以下错误：

brew install -v libtiff

这已解决为Mac安装X11：https://www.xquartz.org/index.html

从RStudio中的源代码安装R软件包的问题 - Ubuntu 16.04

2 个答案: